Regulog Glycine - Vibrionales
| Regulator type: | RNA regulatory element |
| Name: | Glycine |
| RFAM: | RF00504 |
| Regulation mode: | |
| Biological process: | Glycine metabolism |
| Effector: | Glycine |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Vibrionales
- By RNA motif - Glycine
- By effector - Glycine
- By pathway - Glycine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Vibrio cholerae O1 biovar eltor str. N16961 | 1 | 1 |
| Vibrio vulnificus CMCP6 | 1 | 1 |
| Vibrio harveyi ATCC BAA-1116 | 1 | 1 |
| Vibrio parahaemolyticus RIMD 2210633 | 1 | 1 |
| Vibrio shilonii AK1 | 1 | 1 |
| Vibrio splendidus LGP32 | 1 | 1 |
| Vibrio fischeri ES114 | 1 | 1 |
| Vibrio salmonicida LFI1238 | 1 | 1 |
| Vibrio angustum S14 | 1 | 1 |
| Photobacterium profundum SS9 | 1 | 1 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| glyP |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -193 score = 72.33 sequence = TGGAGGAACCTCTGG... Site: position = -324 score = 25.28 sequence = GTTGAAGACTGCAGG... Gene: VC1422: Sodium/glycine symporter GlyP |
*
Vibrio vulnificus CMCP6 Site: position = -366 score = 28.97 sequence = TGAAGGCTACAGGAG... Site: position = -229 score = 64.55 sequence = CTCTGGAGAGAACCG... Gene: VV1_2695: Sodium/glycine symporter GlyP |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -210 score = 63.79 sequence = CTCTGGAGAGAACCG... Site: position = -326 score = 28.95 sequence = TGAAGACTGCAGGAG... Gene: VIBHAR_02469: Sodium/glycine symporter GlyP |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -211 score = 63.35 sequence = CTCTGGAGAGAACCG... Site: position = -327 score = 30.23 sequence = TGAAGACTGCAGGAG... Gene: VP1741: Sodium/glycine symporter GlyP |
*
Vibrio shilonii AK1 Site: position = -246 score = 71.71 sequence = TGGAGGAACCTCTGG... Site: position = -387 score = 23.76 sequence = GTTGAAGACTGCAGG... Gene: VSAK1_25755: Sodium/glycine symporter GlyP |
*
Vibrio splendidus LGP32 Site: position = -387 score = 32.85 sequence = GATGAAGACTGCAGG... Site: position = -264 score = 66.0 sequence = TGGAGGAACCTCTGG... Gene: VS_1291: Sodium/glycine symporter GlyP |
*
Vibrio fischeri ES114 Site: position = -194 score = 62.67 sequence = TCTGGAGAGAGCCGT... Site: position = -312 score = 32.68 sequence = TGAAGACTGCAGGAG... Gene: VF_1454: Sodium/glycine symporter GlyP |
*
Vibrio salmonicida LFI1238 Site: position = -193 score = 62.07 sequence = TCTGGAGAGAGTCGT... Site: position = -309 score = 35.46 sequence = TGAAGACTGCAGGAG... Gene: VSAL_I1796: Sodium/glycine symporter GlyP |
*
Vibrio angustum S14 Site: position = -171 score = 72.16 sequence = TGGAGGAGCCTCTGG... Site: position = -328 score = 32.24 sequence = GATGAAGACAGCAGG... Gene: VAS14_01791: Sodium/glycine symporter GlyP |
*
Photobacterium profundum SS9 Site: position = -197 score = 73.3 sequence = GAGGAGCCTCTGGAG... Site: position = -375 score = 26.33 sequence = TGAAGATAGCAGGAG... Gene: PBPRA2132: Sodium/glycine symporter GlyP |
Sodium/glycine symporter GlyP |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |