Regulon of PsrA in Photobacterium profundum SS9

Properties
Regulator type:	Transcription factor
TF locus tag:
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Fatty acid degradation
Effector:	Oleate
Regulog:	PsrA - Vibrionales
Statistics of regulated genes:
- Genes	8
- Operons	6
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 49 sites [see more]

Member of regulog collections

By trascription factor - PsrA
By taxonomy - Vibrionales
By TF family - TetR
By effector - Oleate
By pathway - Fatty acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -76 Score: 5.5 Sequence: ATGTAAACAAATGTTTGAAA Locus tag: PBPRA2594 Name: fadH Funciton: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
	PBPRA2594	fadH	2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
Position: -128 Score: 5 Sequence: GGTTAAACAATTGTTTTAAA Position: -115 Score: 4.9 Sequence: TTTTAAATAAGTGTTGAAAT Locus tag: PBPRA0064 Name: fadB Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) Locus tag: PBPRA0063 Name: fadA Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
	PBPRA0064	fadB	Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
	PBPRA0063	fadA	3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Position: -69 Score: 5.5 Sequence: AGTTAAACGTATGTTTGAAT Locus tag: PBPRA2339 Name: SO3908 Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
	PBPRA2339	SO3908	Enoyl-CoA hydratase (EC 4.2.1.17)
Position: -373 Score: 5.1 Sequence: TTCTAAACGCCCGTTTTATT Position: -355 Score: 5.5 Sequence: TTTAAAACGGTTGTTTTAAA Locus tag: PBPRA2573 Name: fadL2 Funciton: Long-chain fatty acid transport protein
	PBPRA2573	fadL2	Long-chain fatty acid transport protein
Position: -135 Score: 5.7 Sequence: AATAAAACATTTGTTTGAAA Locus tag: PBPRA0961 Name: fadI Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) Locus tag: PBPRA0962 Name: fadJ Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
	PBPRA0961	fadI	3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
	PBPRA0962	fadJ	Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Position: -179 Score: 5.4 Sequence: AATTATACACTCGTTTAAAA Locus tag: PBPRB0510 Name: fadD Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
	PBPRB0510	fadD	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD