Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of PsrA in Photobacterium profundum SS9

Properties
Regulator type: Transcription factor
TF locus tag:
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid degradation
Effector: Oleate
Regulog: PsrA - Vibrionales
Statistics of regulated genes:
- Genes 8
- Operons 6
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 49 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -76
Score: 5.5
Sequence: ATGTAAACAAATGTTTGAAA
Locus tag: PBPRA2594
Name: fadH
Funciton: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
fadH
2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)

Position: -128
Score: 5
Sequence: GGTTAAACAATTGTTTTAAA
Position: -115
Score: 4.9
Sequence: TTTTAAATAAGTGTTGAAAT
Locus tag: PBPRA0064
Name: fadB
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Locus tag: PBPRA0063
Name: fadA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
fadB
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
fadA
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)

Position: -69
Score: 5.5
Sequence: AGTTAAACGTATGTTTGAAT
Locus tag: PBPRA2339
Name: SO3908
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
SO3908
Enoyl-CoA hydratase (EC 4.2.1.17)

Position: -373
Score: 5.1
Sequence: TTCTAAACGCCCGTTTTATT
Position: -355
Score: 5.5
Sequence: TTTAAAACGGTTGTTTTAAA
Locus tag: PBPRA2573
Name: fadL2
Funciton: Long-chain fatty acid transport protein
fadL2
Long-chain fatty acid transport protein

Position: -135
Score: 5.7
Sequence: AATAAAACATTTGTTTGAAA
Locus tag: PBPRA0961
Name: fadI
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: PBPRA0962
Name: fadJ
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
fadI
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
fadJ
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)

Position: -179
Score: 5.4
Sequence: AATTATACACTCGTTTAAAA
Locus tag: PBPRB0510
Name: fadD
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
fadD
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD