Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Fur in Vibrio vulnificus CMCP6

Properties
Regulator type: Transcription factor
TF locus tag: VV1_0175
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Regulog: Fur - Vibrionales
Statistics of regulated genes:
- Genes 77
- Operons 37
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 447 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -55
Score: 5.9
Sequence: AATTGAGATTTATTATCATTA
Locus tag: VV1_1167
Name: COG3315
Funciton: O-Methyltransferase involved in polyketide biosynthesis
VV1_1167
COG3315
O-Methyltransferase involved in polyketide biosynthesis
Position: -182
Score: 4.8
Sequence: TAATGTTAATGATAATTATTA
Position: -176
Score: 5.8
Sequence: TAATGATAATTATTATCGTTA
Position: -8
Score: 6.1
Sequence: AAATGATAATGATTATTATTA
Locus tag: VV20831
Name: vibF
Funciton: nonribosomal peptide synthetase VibF
Locus tag: VV20830
Name: VV20830
Funciton: Non-ribosomal peptide synthetase modules, siderophore biosynthesis # vulnibactin-specific
VV20831
vibF
nonribosomal peptide synthetase VibF
VV20830
VV20830
Non-ribosomal peptide synthetase modules, siderophore biosynthesis # vulnibactin-specific
Position: -56
Score: 5.7
Sequence: ACATGATAATAATTTTCATTT
Locus tag: VV1_3101
Name: PF10952
Funciton: Protein of unknown function (DUF2753)
VV1_3101
PF10952
Protein of unknown function (DUF2753)
Position: -58
Score: 5.6
Sequence: AGTTGATAATGGTTATCATTA
Locus tag: VV1_1252
Name: sodA
Funciton: Manganese superoxide dismutase (EC 1.15.1.1)
VV1_1252
sodA
Manganese superoxide dismutase (EC 1.15.1.1)
Position: -183
Score: 5.2
Sequence: TGTTGAGAATGATTATTAATA
Locus tag: VV1_0966
Name: COG2132
Funciton: Multicopper oxidase
VV1_0966
COG2132
Multicopper oxidase
Position: -62
Score: 5.5
Sequence: TATTGCGAATAATTCTCACTT
Position: -36
Score: 6
Sequence: TAATGATAATCATTCTTATTT
Locus tag: VV1_2889
Name: PF11449
Funciton: Predicted manganese transporter, 11 TMS
VV1_2889
PF11449
Predicted manganese transporter, 11 TMS
Position: -81
Score: 4.8
Sequence: TTATGAAAACAATTCTCATTG
Position: -75
Score: 5.1
Sequence: AAATGAGAATCAATTGTAATA
Locus tag: VV21010
Name: VV21010
Funciton: Hypothetical protein in aerobactin uptake cluster
Locus tag: VV21011
Name: fhuC
Funciton: ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component
Locus tag: VV21012
Name: fhuD
Funciton: ABC-type Fe3+-hydroxamate transport system, periplasmic component
Locus tag: VV21013
Name: fhuB
Funciton: ABC-type Fe3+-siderophore transport system, permease component
VV21010
VV21010
Hypothetical protein in aerobactin uptake cluster
VV21011
fhuC
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component
VV21012
fhuD
ABC-type Fe3+-hydroxamate transport system, periplasmic component
VV21013
fhuB
ABC-type Fe3+-siderophore transport system, permease component
Position: -108
Score: 5.6
Sequence: AAATAAGATCAATTATCAATT
Locus tag: VV21615
Name: hutW
Funciton: Radical SAM family protein HutW, similar to coproporphyrinogen III oxidase, oxygen-independent, associated with heme uptake
Locus tag: VV21616
Name: huvX
Funciton: Putative heme iron utilization protein
Locus tag: VV21617
Name: hutZ
Funciton: Pyridoxamine 5'-phosphate oxidase-related putative heme iron utilization protein # hutZ
VV21615
hutW
Radical SAM family protein HutW, similar to coproporphyrinogen III oxidase, oxygen-independent, associated with heme uptake
VV21616
huvX
Putative heme iron utilization protein
VV21617
hutZ
Pyridoxamine 5'-phosphate oxidase-related putative heme iron utilization protein # hutZ
Position: -58
Score: 5.7
Sequence: TAATGCGAATAAATATCATTT
Locus tag: VV20364
Name: PF11932
Funciton: hypothetical protein
Locus tag: VV20363
Name: exbB1
Funciton: Biopolymer transport protein ExbB-related protein
Locus tag: VV20362
Name: exbB2
Funciton: TonB system transport protein ExbB2
Locus tag: VV20361
Name: exbD2
Funciton: TonB system transport protein ExbD2
Locus tag: VV20360
Name: tonB
Funciton: Periplasmic protein TonB
Locus tag: VV20359
Name: VC1543
Funciton: TPR domain protein, putative component of TonB system
VV20364
PF11932
hypothetical protein
VV20363
exbB1
Biopolymer transport protein ExbB-related protein
VV20362
exbB2
TonB system transport protein ExbB2
VV20361
exbD2
TonB system transport protein ExbD2
VV20360
tonB
Periplasmic protein TonB
VV20359
VC1543
TPR domain protein, putative component of TonB system
Position: -79
Score: 5.6
Sequence: AATTGATAACTATTATCATTG
Locus tag: VV20844
Name: vibH
Funciton: Amide synthase component of siderophore synthetase # Vibriobactin-specific, VibH
VV20844
vibH
Amide synthase component of siderophore synthetase # Vibriobactin-specific, VibH
Position: -154
Score: 5.5
Sequence: AAATGATAACCATTCTCTTTT
Locus tag: VV21338
Name: VV21338
Funciton: HTH-type transcription regulator, AraC-family
VV21338
VV21338
HTH-type transcription regulator, AraC-family
Position: -95
Score: 4.8
Sequence: AAATGATATAAACTTGCATTT
Position: -78
Score: 5.5
Sequence: ATTTGATAATAATTTTCATTT
Locus tag: VV20793
Name: VV20793
Funciton: Conserved hypothetical protein
Locus tag: VV20794
Name: VV20794
Funciton: ABC transporter, ATP-binding protein
VV20793
VV20793
Conserved hypothetical protein
VV20794
VV20794
ABC transporter, ATP-binding protein
Position: -133
Score: 5.5
Sequence: TAATGATATACATTCTCATTT
Locus tag: VV20839
Name: VV20839
Funciton: Isochorismate pyruvate-lyase of siderophore biosynthesis # Vulnibactin-specific
Locus tag: VV20838
Name: VC0771
Funciton: Isochorismatase (EC 3.3.2.1) of siderophore biosynthesis # Vibriobactin-specific, VibB
Locus tag: VV20837
Name: viuB
Funciton: Vibriobactin utilization protein ViuB
VV20839
VV20839
Isochorismate pyruvate-lyase of siderophore biosynthesis # Vulnibactin-specific
VV20838
VC0771
Isochorismatase (EC 3.3.2.1) of siderophore biosynthesis # Vibriobactin-specific, VibB
VV20837
viuB
Vibriobactin utilization protein ViuB
Position: -42
Score: 5.5
Sequence: TAATAAAAATATTTCTCATTT
Locus tag: VV1_0149
Name: feoA
Funciton: Ferrous iron transport protein A
Locus tag: VV1_0148
Name: feoB
Funciton: Ferrous iron transport protein B
Locus tag: VV1_0147
Name: feoC
Funciton: Ferrous iron transport protein C
VV1_0149
feoA
Ferrous iron transport protein A
VV1_0148
feoB
Ferrous iron transport protein B
VV1_0147
feoC
Ferrous iron transport protein C
Position: -270
Score: 5.8
Sequence: TAATGATAATTATTATCGTTA
Position: -264
Score: 4.7
Sequence: TAATTATTATCGTTAGCATTT
Locus tag: VV20835
Name: VC0773
Funciton: Isochorismate synthase (EC 5.4.4.2) of siderophore biosynthesis # Vibriobactin-specific
Locus tag: VV20836
Name: VC0772
Funciton: 2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58) # Vibriobactin-specific, VibE
VV20835
VC0773
Isochorismate synthase (EC 5.4.4.2) of siderophore biosynthesis # Vibriobactin-specific
VV20836
VC0772
2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58) # Vibriobactin-specific, VibE
Position: -47
Score: 5.4
Sequence: AAATGAGAATTACTACCATTA
Locus tag: VV21337
Name: fhuA
Funciton: TonB-dependent outer membrane receptor for iron siderophores
VV21337
fhuA
TonB-dependent outer membrane receptor for iron siderophores
Position: -66
Score: 5.2
Sequence: AACTAAGAATTATTATTATTC
Locus tag: VV1_1113
Name: VC0074
Funciton: conserved hypothetical protein
VV1_1113
VC0074
conserved hypothetical protein
Position: -163
Score: 6
Sequence: AAATAAGAATGATTATCATTA
Position: -137
Score: 5.5
Sequence: AAGTGAGAATTATTCGCAATA
Locus tag: VV1_2888
Name: ppaC
Funciton: Manganese-dependent inorganic pyrophosphatase (EC 3.6.1.1)
VV1_2888
ppaC
Manganese-dependent inorganic pyrophosphatase (EC 3.6.1.1)
Position: -114
Score: 5.5
Sequence: TAAAGAGAATTATTCTCATTA
Locus tag: VV1_2020
Name: COG3016
Funciton: Conserved hypothetical iron-regulated protein
VV1_2020
COG3016
Conserved hypothetical iron-regulated protein
Position: -113
Score: 5.5
Sequence: AAATGGTAATAATAATCATTT
Locus tag: VV20841
Name: null
Funciton: Aryl carrier domain
Locus tag: VV20842
Name: vctP
Funciton: iron(III) ABC transporter, periplasmic iron-compound-binding protein
VV20841
Aryl carrier domain
VV20842
vctP
iron(III) ABC transporter, periplasmic iron-compound-binding protein
Position: -145
Score: 5.3
Sequence: AAAAGAAAATAATTCGCATTT
Position: -97
Score: 5.3
Sequence: CAATAATAACAATTCTTATTT
Locus tag: VV21016
Name: iutA
Funciton: Aerobactin siderophore receptor IutA,TonB-dependent
VV21016
iutA
Aerobactin siderophore receptor IutA,TonB-dependent
Position: -23
Score: 5
Sequence: AAATAGGACTTATTCTCATTA
Locus tag: VV1_2646
Name: VV1_2646
Funciton: ABC-type multidrug transport system, ATPase and permease component
Locus tag: VV1_2647
Name: pqiA
Funciton: Paraquat-inducible protein A
Locus tag: VV1_2648
Name: pqiB
Funciton: Paraquat-inducible protein B
VV1_2646
VV1_2646
ABC-type multidrug transport system, ATPase and permease component
VV1_2647
pqiA
Paraquat-inducible protein A
VV1_2648
pqiB
Paraquat-inducible protein B
Position: -145
Score: 5.5
Sequence: TAATGATAATTACTATCATTC
Locus tag: VV20277
Name: VCA0575
Funciton: Transcriptional regulator, LysR family
VV20277
VCA0575
Transcriptional regulator, LysR family
Position: -155
Score: 5.8
Sequence: AATTGATATCTATTCTCATTT
Position: -103
Score: 5.3
Sequence: AAATGATAATTGATGTTATTT
Locus tag: VV21548
Name: ptrB
Funciton: Protease II (EC 3.4.21.83)
Locus tag: VV21549
Name: hutR
Funciton: TonB-dependent heme receptor HutR
Locus tag: VV21550
Name: VCA0065
Funciton: Hypothetical with regulatory P domain of a subtilisin-like proprotein convertase
Locus tag: VV21551
Name: VCA0066
Funciton: Hypothetical protein in cluster with HutR, VCA0066 homolog
Locus tag: VV21552
Name: VCA0067
Funciton: Hypothetical protein in cluster with HutR, VCA0067 homolog
VV21548
ptrB
Protease II (EC 3.4.21.83)
VV21549
hutR
TonB-dependent heme receptor HutR
VV21550
VCA0065
Hypothetical with regulatory P domain of a subtilisin-like proprotein convertase
VV21551
VCA0066
Hypothetical protein in cluster with HutR, VCA0066 homolog
VV21552
VCA0067
Hypothetical protein in cluster with HutR, VCA0067 homolog
Position: -144
Score: 5.2
Sequence: AAATAAGAATTGATGTCATTT
Position: -76
Score: 5.5
Sequence: AATTGAAAATGATTCTTAATT
Locus tag: VV1_3034
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: VV1_3033
Name: nfrC
Funciton: Putative nitrite reductase, Fe-S protein (NrfC)
Locus tag: VV1_3032
Name: nrfD
Funciton: Putative nitrate reductase, formate dependent (NrfD)
VV1_3034
nrfB
Cytochrome c-type protein NrfB precursor
VV1_3033
nfrC
Putative nitrite reductase, Fe-S protein (NrfC)
VV1_3032
nrfD
Putative nitrate reductase, formate dependent (NrfD)
Position: -115
Score: 5.6
Sequence: AATTGATAATTGATCTTATTT
Locus tag: VV21614
Name: tonB-hmu
Funciton: Periplasmic protein TonB involved in hemin uptake
Locus tag: VV21613
Name: exbB-hmu
Funciton: TonB system transport protein ExbB involved in hemin uptake
Locus tag: VV21612
Name: exbD-hmu
Funciton: TonB system transport protein ExbD involved in hemin uptake
Locus tag: VV21611
Name: hmuT
Funciton: Hemin ABC transporter, periplasmic hemin-binding protein
Locus tag: VV21610
Name: hmuU
Funciton: Hemin ABC transporter, permease component
Locus tag: VV21609
Name: hmuV
Funciton: Hemin ABC transporter, ATP-binding subunit
VV21614
tonB-hmu
Periplasmic protein TonB involved in hemin uptake
VV21613
exbB-hmu
TonB system transport protein ExbB involved in hemin uptake
VV21612
exbD-hmu
TonB system transport protein ExbD involved in hemin uptake
VV21611
hmuT
Hemin ABC transporter, periplasmic hemin-binding protein
VV21610
hmuU
Hemin ABC transporter, permease component
VV21609
hmuV
Hemin ABC transporter, ATP-binding subunit
Position: -38
Score: 5.5
Sequence: AAATAAGAATAATTAGCACTA
Locus tag: VV1_2968
Name: irpA
Funciton: Iron-regulated protein A precursor
VV1_2968
irpA
Iron-regulated protein A precursor
Position: -41
Score: 6.4
Sequence: AAATGATAATAATTATCATTA
Position: -38
Score: 4.4
Sequence: TGATAATAATTATCATTATAT
Locus tag: VV21178
Name: VV21178
Funciton: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Locus tag: VV21177
Name: VV21177
Funciton: ABC-type oligopeptide transport system, ATPase component
Locus tag: VV21176
Name: VCA0003
Funciton: Conesrved hypothetical protein
VV21178
VV21178
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
VV21177
VV21177
ABC-type oligopeptide transport system, ATPase component
VV21176
VCA0003
Conesrved hypothetical protein
Position: -42
Score: 5.2
Sequence: TACTGATAAACGTTATCATTA
Locus tag: VV1_1660
Name: fbpA
Funciton: Ferric iron ABC transporter, iron-binding protein
Locus tag: VV1_1661
Name: fbpA
Funciton: Ferric iron ABC transporter, iron-binding protein
Locus tag: VV1_1662
Name: fbpB
Funciton: Ferric iron ABC transporter, permease protein
Locus tag: VV1_1663
Name: fbpC
Funciton: Ferric iron ABC transporter, ATP-binding protein
VV1_1660
fbpA
Ferric iron ABC transporter, iron-binding protein
VV1_1661
fbpA
Ferric iron ABC transporter, iron-binding protein
VV1_1662
fbpB
Ferric iron ABC transporter, permease protein
VV1_1663
fbpC
Ferric iron ABC transporter, ATP-binding protein
Position: -128
Score: 4.7
Sequence: AAATGCTAACGATAATAATTA
Position: -122
Score: 5.8
Sequence: TAACGATAATAATTATCATTA
Locus tag: VV20834
Name: VC0774
Funciton: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28) # Vibriobactin-specific, VibA
VV20834
VC0774
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28) # Vibriobactin-specific, VibA
Position: -299
Score: 5
Sequence: AAATGAGAATGCTTTACATTT
Locus tag: VV20843
Name: viuA
Funciton: Ferric aerobactin receptor, TonB-dependent
VV20843
viuA
Ferric aerobactin receptor, TonB-dependent
Position: -49
Score: 5.2
Sequence: CAATAATATTCATTCTCATTA
Locus tag: VV21555
Name: torS
Funciton: Methyl-accepting chemotaxis protein
VV21555
torS
Methyl-accepting chemotaxis protein
Position: -79
Score: 5.9
Sequence: AATTGATATTCATTCTCATTT
Locus tag: VV21506
Name: null
Funciton: hypothetical protein
VV21506
hypothetical protein
Position: -57
Score: 5.5
Sequence: TAATGATAATGATTATCTATT
Locus tag: VV1_1340
Name: bfd
Funciton: Bacterioferritin-associated ferredoxin
Locus tag: VV1_1341
Name: bfr
Funciton: Bacterioferritin
VV1_1340
bfd
Bacterioferritin-associated ferredoxin
VV1_1341
bfr
Bacterioferritin
Position: -336
Score: 5.1
Sequence: TATCAATAATAATTCTCATTC
Locus tag: VV20115
Name: VCA0743
Funciton: uroporphyrinogen decarboxylase
VV20115
VCA0743
uroporphyrinogen decarboxylase
Position: -57
Score: 6.2
Sequence: AAATGATATTTATTATCATTT
Locus tag: VV20569
Name: VCA1041
Funciton: Phosphomannomutase
VV20569
VCA1041
Phosphomannomutase
Position: -317
Score: 6.2
Sequence: AAATGATAATAAATATCATTT
Locus tag: VV20568
Name: VV20568
Funciton: Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Locus tag: VV20567
Name: VV20567
Funciton: Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Locus tag: VV20566
Name: VV20566
Funciton: Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
Locus tag: VV20565
Name: VV20565
Funciton: Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
VV20568
VV20568
Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
VV20567
VV20567
Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
VV20566
VV20566
Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
VV20565
VV20565
Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
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