Regulog VCA0673 - Vibrionales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:
Effector:
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 9 sites [see more]

Member of regulog collections

By taxonomy - Vibrionales
By TF family - LacI

Statistics of regulated genes
Genome	Genes	Operons
Photobacterium profundum SS9
Vibrio angustum S14
Vibrio cholerae O1 biovar eltor str. N16961	5	3
Vibrio fischeri ES114
Vibrio harveyi ATCC BAA-1116	6	3
Vibrio parahaemolyticus RIMD 2210633
Vibrio salmonicida LFI1238	3	1
Vibrio shilonii AK1	2	1
Vibrio splendidus LGP32
Vibrio vulnificus CMCP6

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
VCA0669	Photobacterium profundum SS9	Vibrio angustum S14	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -163 score = 6.43331 sequence = AAATGGGTACGCATTCATTT Gene: VCA0669: MFS transporter	Vibrio fischeri ES114	* Vibrio harveyi ATCC BAA-1116 Site: position = -163 score = 6.28052 sequence = TAATGGGTACGCATTCATTT Site: position = -295 score = 5.16488 sequence = ACTTGAGTACGTAACCATTT Gene: VIBHAR_04815: MFS transporter	Vibrio parahaemolyticus RIMD 2210633	* Vibrio salmonicida LFI1238 Site: position = -153 score = 6.55511 sequence = AAATGGGTACGCACCCATTT Gene: VSAL_I2463: MFS transporter	Vibrio shilonii AK1 Gene: VSAK1_07079: MFS transporter	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6	MFS transporter
VCA0671	Photobacterium profundum SS9	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VCA0671: hypothetical protein	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_04814: hypothetical protein	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238 Gene: VSAL_I2464: hypothetical protein	Vibrio shilonii AK1 Gene: VSAK1_07074: hypothetical protein	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6	hypothetical protein
VCA0673	Photobacterium profundum SS9	Vibrio angustum S14	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -43 score = 5.22743 sequence = TGATGACTACGTAACTATTT Gene: VCA0673: Transcriptional regulator, LacI family	Vibrio fischeri ES114	* Vibrio harveyi ATCC BAA-1116 Site: position = -64 score = 5.61653 sequence = TTATGACTACGTACCTATTT Gene: VIBHAR_04812: Transcriptional regulator, LacI family	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238 Gene: VSAL_I2465: Transcriptional regulator, LacI family	2 Vibrio shilonii AK1* Site: position = -64 score = 5.4273 sequence = TTATGCATACGTACCAATTT Gene: VSAK1_07064: Transcriptional regulator, LacI family Gene: VSAK1_07059: Transcriptional regulator, LacI family	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6	Transcriptional regulator, LacI family
VIBHAR_04813	Photobacterium profundum SS9	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_04813: outer membrane porin, putative	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	Vibrio shilonii AK1 Gene: VSAK1_07069: outer membrane porin, putative	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6	outer membrane porin, putative

CRON 2.
VCA0667	Photobacterium profundum SS9	Vibrio angustum S14	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -195 score = 6.43331 sequence = AAATGAATGCGTACCCATTT Gene: VCA0667: sodium-solute symporter, putative	Vibrio fischeri ES114	* Vibrio harveyi ATCC BAA-1116 Site: position = -134 score = 6.28052 sequence = AAATGAATGCGTACCCATTA Gene: VIBHAR_04816: sodium-solute symporter, putative	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	Vibrio shilonii AK1 Gene: VSAK1_07084: sodium-solute symporter, putative	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6	sodium-solute symporter, putative
sds	Photobacterium profundum SS9	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VCA0666: L-serine dehydratase (EC 4.3.1.17)	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_04817: L-serine dehydratase (EC 4.3.1.17)	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	Vibrio shilonii AK1 Gene: VSAK1_07089: L-serine dehydratase (EC 4.3.1.17)	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6	L-serine dehydratase (EC 4.3.1.17)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog VCA0673 - Vibrionales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --