Regulog GalR - Vibrionales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Galactose utilization
Effector:	Galactose
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 30 sites [see more]

Member of regulog collections

By taxonomy - Vibrionales
By TF family - LacI
By effector - Galactose
By pathway - Galactose utilization

Statistics of regulated genes
Genome	Genes	Operons
Photobacterium profundum SS9	8	3
Vibrio angustum S14	4	1
Vibrio cholerae O1 biovar eltor str. N16961	5	3
Vibrio fischeri ES114	5	2
Vibrio harveyi ATCC BAA-1116	2	2
Vibrio parahaemolyticus RIMD 2210633	5	2
Vibrio salmonicida LFI1238
Vibrio shilonii AK1	14	5
Vibrio splendidus LGP32
Vibrio vulnificus CMCP6	11	6

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
lacE	Photobacterium profundum SS9	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	* Vibrio shilonii AK1 Site: position = -58 score = 5.57492 sequence = CTGTGTAAACGTTTCCAAAT Site: position = -223 score = 4.74864 sequence = AATTGTTAACGTATCCAAAT Gene: VSAK1_10773: Probable lactose uptake ABC transporter, periplasmic solute-binding protein	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6	Probable lactose uptake ABC transporter, periplasmic solute-binding protein
lacF	Photobacterium profundum SS9	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	Vibrio shilonii AK1 Gene: VSAK1_10768: Probable lactose uptake ABC transporter, permease protein 1	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6	Probable lactose uptake ABC transporter, permease protein 1
lacG	Photobacterium profundum SS9	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	Vibrio shilonii AK1 Gene: VSAK1_10763: Probable lactose uptake ABC transporter, permease protein 2	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6	Probable lactose uptake ABC transporter, permease protein 2
lacZ	Photobacterium profundum SS9 Gene: PBPRB0034: Beta-galactosidase (EC 3.2.1.23)	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	Vibrio shilonii AK1 Gene: VSAK1_10758: Beta-galactosidase (EC 3.2.1.23)	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6 Gene: VV2_1327: Beta-galactosidase (EC 3.2.1.23)	Beta-galactosidase (EC 3.2.1.23)
lacK	Photobacterium profundum SS9	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	Vibrio shilonii AK1 Gene: VSAK1_10753: Probable lactose uptake ABC transporter, ATP-binding protein	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6	Probable lactose uptake ABC transporter, ATP-binding protein
lacP	Photobacterium profundum SS9	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	Vibrio shilonii AK1	Vibrio splendidus LGP32	* Vibrio vulnificus CMCP6 Site: position = -96 score = 5.19872 sequence = TCATGAAAACGTTTCCATAG Gene: VV21329: predicted lactoporin	predicted lactoporin
VV21328	Photobacterium profundum SS9	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6 Gene: VV21328: lactose operon periplasmic protein	lactose operon periplasmic protein

CRON 2.
mglB	* Photobacterium profundum SS9 Site: position = -154 score = 5.02059 sequence = TTGGGGGAACGTTTACATTA Gene: PBPRB1872: Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3)	Vibrio angustum S14	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -107 score = 5.37786 sequence = CTGAGTAAACGTTTTCACTG Gene: VC1325: Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3)	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	* Vibrio shilonii AK1 Site: position = -327 score = 5.45014 sequence = TATTGTAAACGTTCTCATAA Site: position = -97 score = 4.74535 sequence = TGGGTTAAACGTTTTCACTT Gene: VSAK1_10743: Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3)	Vibrio splendidus LGP32	* Vibrio vulnificus CMCP6 Site: position = -90 score = 5.33382 sequence = AAGGGTAAACGTTTTCACCA Gene: VV21326: Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3)	Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3)
mglA	Photobacterium profundum SS9 Gene: PBPRB1871: Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17)	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC1327: Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17)	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	Vibrio shilonii AK1 Gene: VSAK1_10738: Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17)	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6 Gene: VV21325: Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17)	Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17)
mglC	Photobacterium profundum SS9 Gene: PBPRB1870: Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3)	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC1328: Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3)	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	Vibrio shilonii AK1 Gene: VSAK1_10733: Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3)	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6 Gene: VV21324: Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3)	Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3)

CRON 3.
VV21682	Photobacterium profundum SS9	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	Vibrio shilonii AK1	Vibrio splendidus LGP32	* Vibrio vulnificus CMCP6 Site: position = -119 score = 4.79423 sequence = AAATGCAATCGATTACACAT Gene: VV21682: Chitinase, putative	Chitinase, putative

CRON 4.
galR	* Photobacterium profundum SS9 Site: position = -152 score = 5.00608 sequence = TACTGATAACGATTACAAAA Gene: PBPRA2078: Transcriptional regulator for galactose and lactose utilization, LacI family	Vibrio angustum S14 Gene: VAS14_15144: Transcriptional regulator for galactose and lactose utilization, LacI family	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -139 score = 5.45537 sequence = CATTAAAAACGTTTACACTT Gene: VC2337: Transcriptional regulator for galactose and lactose utilization, LacI family	* Vibrio fischeri ES114 Site: position = -107 score = 5.72277 sequence = TAATGATAACGTTTACAAAA Gene: VF_A0361: Transcriptional regulator for galactose and lactose utilization, LacI family	* Vibrio harveyi ATCC BAA-1116 Site: position = -149 score = 4.66013 sequence = CTAAGATAACGTTTATACAT Gene: VIBHAR_03325: Transcriptional regulator for galactose and lactose utilization, LacI family	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -149 score = 5.57747 sequence = AAAAGATAACGTTTACACTA Gene: VP2393: Transcriptional regulator for galactose and lactose utilization, LacI family	Vibrio salmonicida LFI1238	2 Vibrio shilonii AK1* Gene: VSAK1_10693: Transcriptional regulator for galactose and lactose utilization, LacI family Site: position = -115 score = 5.22353 sequence = TTTTGGAAACGATTACTCTA Site: position = -245 score = 5.60066 sequence = TCATGGAAACGTTTACAATT Gene: VSAK1_00922: Transcriptional regulator for galactose and lactose utilization, LacI family	Vibrio splendidus LGP32	2 Vibrio vulnificus CMCP6* Gene: VV21323: Transcriptional regulator for galactose and lactose utilization, LacI family Site: position = -139 score = 5.57747 sequence = AAAAGATAACGTTTACACTA Gene: VV1_1775: Transcriptional regulator for galactose and lactose utilization, LacI family	Transcriptional regulator for galactose and lactose utilization, LacI family

CRON 5.
galE	* Photobacterium profundum SS9 Site: position = -105 score = 6.01452 sequence = TCGTGGAAACGTTTACACAA Gene: PBPRA2082: UDP-glucose 4-epimerase (EC 5.1.3.2)	* Vibrio angustum S14 Site: position = -131 score = 6.35725 sequence = AAATGTAAACGTTTACACAA Gene: VAS14_15124: UDP-glucose 4-epimerase (EC 5.1.3.2)	Vibrio cholerae O1 biovar eltor str. N16961	* Vibrio fischeri ES114 Site: position = -247 score = 5.57794 sequence = GATTGTAAACGTTTACAATT Site: position = -92 score = 6.44958 sequence = TAGTGTAAACGTTTACATTT Gene: VF_A0352: UDP-glucose 4-epimerase (EC 5.1.3.2)	* Vibrio harveyi ATCC BAA-1116 Site: position = -254 score = 6.0236 sequence = TTGTGTAAACGTTTATACAT Site: position = -153 score = 5.41258 sequence = TTGTGGAAACGTTTGCTCTA Gene: VIBHAR_03331: UDP-glucose 4-epimerase (EC 5.1.3.2)	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -170 score = 6.25464 sequence = TTGTGGAAACGTTTACACAA Gene: VP2400: UDP-glucose 4-epimerase (EC 5.1.3.2)	Vibrio salmonicida LFI1238	* Vibrio shilonii AK1 Site: position = -238 score = 4.71204 sequence = TTGTGTAATCGTTTAACTTT Site: position = -140 score = 6.6085 sequence = TAGTGTAAACGTTTACACTT Gene: VSAK1_10728: UDP-glucose 4-epimerase (EC 5.1.3.2)	Vibrio splendidus LGP32	2 Vibrio vulnificus CMCP6* Site: position = -125 score = 6.44298 sequence = TAGTGAAAACGTTTACACTT Gene: VV1_1770: UDP-glucose 4-epimerase (EC 5.1.3.2) Gene: VV21095: UDP-glucose 4-epimerase (EC 5.1.3.2)	UDP-glucose 4-epimerase (EC 5.1.3.2)
galT	Photobacterium profundum SS9 Gene: PBPRA2081: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12)	Vibrio angustum S14 Gene: VAS14_15129: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12)	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -162 score = 5.64227 sequence = TTGTGAAAGCGTTTACACTG Gene: VC1596: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12)	Vibrio fischeri ES114 Gene: VF_A0353: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12)	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_03329: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12)	Vibrio parahaemolyticus RIMD 2210633 Gene: VP2399: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12)	Vibrio salmonicida LFI1238	Vibrio shilonii AK1 Gene: VSAK1_10723: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12)	Vibrio splendidus LGP32	2 Vibrio vulnificus CMCP6 Gene: VV1_1771: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12) Gene: VV21094: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12)	Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12)
galK	Photobacterium profundum SS9 Gene: PBPRA2080: Galactokinase (EC 2.7.1.6)	Vibrio angustum S14 Gene: VAS14_15134: Galactokinase (EC 2.7.1.6)	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC1595: Galactokinase (EC 2.7.1.6)	Vibrio fischeri ES114 Gene: VF_A0355: Galactokinase (EC 2.7.1.6)	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_03327: Galactokinase (EC 2.7.1.6)	Vibrio parahaemolyticus RIMD 2210633 Gene: VP2398: Galactokinase (EC 2.7.1.6)	Vibrio salmonicida LFI1238	Vibrio shilonii AK1 Gene: VSAK1_10718: Galactokinase (EC 2.7.1.6)	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6 Gene: VV1_1772: Galactokinase (EC 2.7.1.6)	Galactokinase (EC 2.7.1.6)
galM	Photobacterium profundum SS9 Gene: PBPRA2079: Aldose 1-epimerase (EC 5.1.3.3)	Vibrio angustum S14 Gene: VAS14_15139: Aldose 1-epimerase (EC 5.1.3.3)	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC1594: Aldose 1-epimerase (EC 5.1.3.3)	Vibrio fischeri ES114 Gene: VF_A0356: Aldose 1-epimerase (EC 5.1.3.3)	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_03326: Aldose 1-epimerase (EC 5.1.3.3)	Vibrio parahaemolyticus RIMD 2210633 Gene: VP2397: Aldose 1-epimerase (EC 5.1.3.3)	Vibrio salmonicida LFI1238	Vibrio shilonii AK1 Gene: VSAK1_10713: Aldose 1-epimerase (EC 5.1.3.3)	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6 Gene: VV1_1773: Aldose 1-epimerase (EC 5.1.3.3)	Aldose 1-epimerase (EC 5.1.3.3)

CRON 6.
galW	Photobacterium profundum SS9	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	* Vibrio shilonii AK1 Site: position = -103 score = 5.60717 sequence = CAGTGTAAACGTTTCCAGTT Gene: VSAK1_00937: Predicted Na+/alpha-galactoside symporter	Vibrio splendidus LGP32	* Vibrio vulnificus CMCP6 Site: position = -148 score = 5.16768 sequence = GTCTGTAAACGTTTCCATAA Gene: VV21332: Predicted Na+/alpha-galactoside symporter	Predicted Na+/alpha-galactoside symporter

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog GalR - Vibrionales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --