Regulog GalR - Vibrionales
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Galactose utilization |
| Effector: | Galactose |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Vibrionales
- By TF family - LacI
- By effector - Galactose
- By pathway - Galactose utilization
| Genome | Genes | Operons |
|---|---|---|
| Photobacterium profundum SS9 | 8 | 3 |
| Vibrio angustum S14 | 4 | 1 |
| Vibrio cholerae O1 biovar eltor str. N16961 | 5 | 3 |
| Vibrio fischeri ES114 | 5 | 2 |
| Vibrio harveyi ATCC BAA-1116 | 2 | 2 |
| Vibrio parahaemolyticus RIMD 2210633 | 5 | 2 |
| Vibrio salmonicida LFI1238 | ||
| Vibrio shilonii AK1 | 14 | 5 |
| Vibrio splendidus LGP32 | ||
| Vibrio vulnificus CMCP6 | 11 | 6 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| lacE |
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Vibrio shilonii AK1 Site: position = -58 score = 5.57492 sequence = CTGTGTAAACGTTTCCAAAT Site: position = -223 score = 4.74864 sequence = AATTGTTAACGTATCCAAAT Gene: VSAK1_10773: Probable lactose uptake ABC transporter, periplasmic solute-binding protein |
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Probable lactose uptake ABC transporter, periplasmic solute-binding protein |
| lacF |
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Gene: VSAK1_10768: Probable lactose uptake ABC transporter, permease protein 1 |
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Probable lactose uptake ABC transporter, permease protein 1 |
| lacG |
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Gene: VSAK1_10763: Probable lactose uptake ABC transporter, permease protein 2 |
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Probable lactose uptake ABC transporter, permease protein 2 |
| lacZ |
Gene: PBPRB0034: Beta-galactosidase (EC 3.2.1.23) |
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Gene: VSAK1_10758: Beta-galactosidase (EC 3.2.1.23) |
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Gene: VV2_1327: Beta-galactosidase (EC 3.2.1.23) |
Beta-galactosidase (EC 3.2.1.23) |
| lacK |
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Gene: VSAK1_10753: Probable lactose uptake ABC transporter, ATP-binding protein |
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Probable lactose uptake ABC transporter, ATP-binding protein |
| lacP |
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Vibrio vulnificus CMCP6 Site: position = -96 score = 5.19872 sequence = TCATGAAAACGTTTCCATAG Gene: VV21329: predicted lactoporin |
predicted lactoporin |
| VV21328 |
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Gene: VV21328: lactose operon periplasmic protein |
lactose operon periplasmic protein |
| CRON 2. | |||||||||||
| mglB |
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Photobacterium profundum SS9 Site: position = -154 score = 5.02059 sequence = TTGGGGGAACGTTTACATTA Gene: PBPRB1872: Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) |
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Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -107 score = 5.37786 sequence = CTGAGTAAACGTTTTCACTG Gene: VC1325: Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) |
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Vibrio shilonii AK1 Site: position = -327 score = 5.45014 sequence = TATTGTAAACGTTCTCATAA Site: position = -97 score = 4.74535 sequence = TGGGTTAAACGTTTTCACTT Gene: VSAK1_10743: Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) |
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Vibrio vulnificus CMCP6 Site: position = -90 score = 5.33382 sequence = AAGGGTAAACGTTTTCACCA Gene: VV21326: Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) |
Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) |
| mglA |
Gene: PBPRB1871: Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) |
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Gene: VC1327: Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) |
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Gene: VSAK1_10738: Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) |
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Gene: VV21325: Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) |
Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) |
| mglC |
Gene: PBPRB1870: Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3) |
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Gene: VC1328: Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3) |
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Gene: VSAK1_10733: Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3) |
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Gene: VV21324: Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3) |
Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3) |
| CRON 3. | |||||||||||
| VV21682 |
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Vibrio vulnificus CMCP6 Site: position = -119 score = 4.79423 sequence = AAATGCAATCGATTACACAT Gene: VV21682: Chitinase, putative |
Chitinase, putative |
| CRON 4. | |||||||||||
| galR |
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Photobacterium profundum SS9 Site: position = -152 score = 5.00608 sequence = TACTGATAACGATTACAAAA Gene: PBPRA2078: Transcriptional regulator for galactose and lactose utilization, LacI family |
Gene: VAS14_15144: Transcriptional regulator for galactose and lactose utilization, LacI family |
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Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -139 score = 5.45537 sequence = CATTAAAAACGTTTACACTT Gene: VC2337: Transcriptional regulator for galactose and lactose utilization, LacI family |
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Vibrio fischeri ES114 Site: position = -107 score = 5.72277 sequence = TAATGATAACGTTTACAAAA Gene: VF_A0361: Transcriptional regulator for galactose and lactose utilization, LacI family |
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Vibrio harveyi ATCC BAA-1116 Site: position = -149 score = 4.66013 sequence = CTAAGATAACGTTTATACAT Gene: VIBHAR_03325: Transcriptional regulator for galactose and lactose utilization, LacI family |
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Vibrio parahaemolyticus RIMD 2210633 Site: position = -149 score = 5.57747 sequence = AAAAGATAACGTTTACACTA Gene: VP2393: Transcriptional regulator for galactose and lactose utilization, LacI family |
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*2
Vibrio shilonii AK1 Gene: VSAK1_10693: Transcriptional regulator for galactose and lactose utilization, LacI family Site: position = -115 score = 5.22353 sequence = TTTTGGAAACGATTACTCTA Site: position = -245 score = 5.60066 sequence = TCATGGAAACGTTTACAATT Gene: VSAK1_00922: Transcriptional regulator for galactose and lactose utilization, LacI family |
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*2
Vibrio vulnificus CMCP6 Gene: VV21323: Transcriptional regulator for galactose and lactose utilization, LacI family Site: position = -139 score = 5.57747 sequence = AAAAGATAACGTTTACACTA Gene: VV1_1775: Transcriptional regulator for galactose and lactose utilization, LacI family |
Transcriptional regulator for galactose and lactose utilization, LacI family |
| CRON 5. | |||||||||||
| galE |
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Photobacterium profundum SS9 Site: position = -105 score = 6.01452 sequence = TCGTGGAAACGTTTACACAA Gene: PBPRA2082: UDP-glucose 4-epimerase (EC 5.1.3.2) |
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Vibrio angustum S14 Site: position = -131 score = 6.35725 sequence = AAATGTAAACGTTTACACAA Gene: VAS14_15124: UDP-glucose 4-epimerase (EC 5.1.3.2) |
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Vibrio fischeri ES114 Site: position = -247 score = 5.57794 sequence = GATTGTAAACGTTTACAATT Site: position = -92 score = 6.44958 sequence = TAGTGTAAACGTTTACATTT Gene: VF_A0352: UDP-glucose 4-epimerase (EC 5.1.3.2) |
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Vibrio harveyi ATCC BAA-1116 Site: position = -254 score = 6.0236 sequence = TTGTGTAAACGTTTATACAT Site: position = -153 score = 5.41258 sequence = TTGTGGAAACGTTTGCTCTA Gene: VIBHAR_03331: UDP-glucose 4-epimerase (EC 5.1.3.2) |
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Vibrio parahaemolyticus RIMD 2210633 Site: position = -170 score = 6.25464 sequence = TTGTGGAAACGTTTACACAA Gene: VP2400: UDP-glucose 4-epimerase (EC 5.1.3.2) |
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Vibrio shilonii AK1 Site: position = -238 score = 4.71204 sequence = TTGTGTAATCGTTTAACTTT Site: position = -140 score = 6.6085 sequence = TAGTGTAAACGTTTACACTT Gene: VSAK1_10728: UDP-glucose 4-epimerase (EC 5.1.3.2) |
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*2
Vibrio vulnificus CMCP6 Site: position = -125 score = 6.44298 sequence = TAGTGAAAACGTTTACACTT Gene: VV1_1770: UDP-glucose 4-epimerase (EC 5.1.3.2) Gene: VV21095: UDP-glucose 4-epimerase (EC 5.1.3.2) |
UDP-glucose 4-epimerase (EC 5.1.3.2) |
| galT |
Gene: PBPRA2081: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12) |
Gene: VAS14_15129: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12) |
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Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -162 score = 5.64227 sequence = TTGTGAAAGCGTTTACACTG Gene: VC1596: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12) |
Gene: VF_A0353: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12) |
Gene: VIBHAR_03329: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12) |
Gene: VP2399: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12) |
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Gene: VSAK1_10723: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12) |
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2
Vibrio vulnificus CMCP6 Gene: VV1_1771: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12) Gene: VV21094: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12) |
Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12) |
| galK |
Gene: PBPRA2080: Galactokinase (EC 2.7.1.6) |
Gene: VAS14_15134: Galactokinase (EC 2.7.1.6) |
Gene: VC1595: Galactokinase (EC 2.7.1.6) |
Gene: VF_A0355: Galactokinase (EC 2.7.1.6) |
Gene: VIBHAR_03327: Galactokinase (EC 2.7.1.6) |
Gene: VP2398: Galactokinase (EC 2.7.1.6) |
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Gene: VSAK1_10718: Galactokinase (EC 2.7.1.6) |
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Gene: VV1_1772: Galactokinase (EC 2.7.1.6) |
Galactokinase (EC 2.7.1.6) |
| galM |
Gene: PBPRA2079: Aldose 1-epimerase (EC 5.1.3.3) |
Gene: VAS14_15139: Aldose 1-epimerase (EC 5.1.3.3) |
Gene: VC1594: Aldose 1-epimerase (EC 5.1.3.3) |
Gene: VF_A0356: Aldose 1-epimerase (EC 5.1.3.3) |
Gene: VIBHAR_03326: Aldose 1-epimerase (EC 5.1.3.3) |
Gene: VP2397: Aldose 1-epimerase (EC 5.1.3.3) |
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Gene: VSAK1_10713: Aldose 1-epimerase (EC 5.1.3.3) |
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Gene: VV1_1773: Aldose 1-epimerase (EC 5.1.3.3) |
Aldose 1-epimerase (EC 5.1.3.3) |
| CRON 6. | |||||||||||
| galW |
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Vibrio shilonii AK1 Site: position = -103 score = 5.60717 sequence = CAGTGTAAACGTTTCCAGTT Gene: VSAK1_00937: Predicted Na+/alpha-galactoside symporter |
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Vibrio vulnificus CMCP6 Site: position = -148 score = 5.16768 sequence = GTCTGTAAACGTTTCCATAA Gene: VV21332: Predicted Na+/alpha-galactoside symporter |
Predicted Na+/alpha-galactoside symporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |