Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog VSAK1_09283 - Vibrionales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Metabolite transport
Effector:
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 12 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Photobacterium profundum SS9 2 2
Vibrio angustum S14 2 2
Vibrio cholerae O1 biovar eltor str. N16961
Vibrio fischeri ES114
Vibrio harveyi ATCC BAA-1116
Vibrio parahaemolyticus RIMD 2210633
Vibrio salmonicida LFI1238
Vibrio shilonii AK1 2 2
Vibrio splendidus LGP32
Vibrio vulnificus CMCP6
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
VSAK1_09283
*
Photobacterium profundum SS9

Site:
position = -104
score = 8.08856
sequence = AATTGTATC-(0)-GACACAATT

Site:
position = -10
score = 7.74356
sequence = TATTGTCAC-(1)-ATGACAATC

Gene: PBPRA0298: Transcriptional regulator, GntR family
*
Vibrio angustum S14

Site:
position = -125
score = 8.53138
sequence = AATTGTACC-(0)-GATACAATT

Site:
position = -10
score = 7.74356
sequence = TATTGTCAC-(1)-ATGACAATC

Gene: VAS14_21252: Transcriptional regulator, GntR family
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio fischeri ES114
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio salmonicida LFI1238
*
Vibrio shilonii AK1

Site:
position = -105
score = 8.53138
sequence = AATTGTACC-(0)-GATACAATT

Site:
position = -10
score = 7.74356
sequence = TATTGTCAC-(1)-ATGACAATC

Gene: VSAK1_09283: Transcriptional regulator, GntR family
 
Vibrio splendidus LGP32
 
Vibrio vulnificus CMCP6
Transcriptional regulator, GntR family
 
CRON 2.
PF01810
*
Photobacterium profundum SS9

Site:
position = -58
score = 8.08856
sequence = AATTGTGTC-(0)-GATACAATT

Site:
position = -153
score = 7.74356
sequence = GATTGTCAT-(1)-GTGACAATA

Gene: PBPRA0299: Transporter, LysE family
*
Vibrio angustum S14

Site:
position = -71
score = 8.53138
sequence = AATTGTATC-(0)-GGTACAATT

Site:
position = -187
score = 7.74356
sequence = GATTGTCAT-(1)-GTGACAATA

Gene: VAS14_21247: Transporter, LysE family
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio fischeri ES114
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio salmonicida LFI1238
*
Vibrio shilonii AK1

Site:
position = -128
score = 7.74356
sequence = GATTGTCAT-(1)-GTGACAATA

Site:
position = -32
score = 8.53138
sequence = AATTGTATC-(0)-GGTACAATT

Gene: VSAK1_09278: Transporter, LysE family
 
Vibrio splendidus LGP32
 
Vibrio vulnificus CMCP6
Transporter, LysE family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise