Regulog BirA - Vibrionales

Properties
Regulator type:	Transcription factor
Regulator family:	BirA
Regulation mode:	repressor
Biological process:	Biotin biosynthesis
Effector:	Biotin
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 20 sites [see more]

Member of regulog collections

By trascription factor - BirA
By taxonomy - Vibrionales
By TF family - BirA
By effector - Biotin
By pathway - Biotin biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Vibrio cholerae O1 biovar eltor str. N16961	5	2
Vibrio vulnificus CMCP6	6	2
Vibrio harveyi ATCC BAA-1116	5	2
Vibrio parahaemolyticus RIMD 2210633	5	2
Vibrio shilonii AK1	5	2
Vibrio splendidus LGP32	5	2
Vibrio fischeri ES114	5	2
Vibrio salmonicida LFI1238	5	2
Vibrio angustum S14	5	2
Photobacterium profundum SS9	5	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
bioA	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -66 score = 8.19401 sequence = CTGTCAACA-(15)-GGTTTACAT Gene: VC1111: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	2 Vibrio vulnificus CMCP6* Site: position = -72 score = 7.76575 sequence = CTGTCAACA-(16)-AGTTTACAT Gene: VV1_2944: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) Gene: VV1_2945: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	* Vibrio harveyi ATCC BAA-1116 Site: position = -73 score = 7.76575 sequence = CTGTCAACA-(16)-AGTTTACAT Gene: VIBHAR_01806: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -73 score = 7.76575 sequence = CTGTCAACA-(16)-AGTTTACAT Gene: VP1112: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	* Vibrio shilonii AK1 Site: position = -62 score = 7.21904 sequence = CTGTCAACA-(15)-AGTTTACAC Gene: VSAK1_00080: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	* Vibrio splendidus LGP32 Site: position = -72 score = 7.76575 sequence = CTGTCAACA-(16)-AGTTTACAT Gene: VS_2041: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	* Vibrio fischeri ES114 Site: position = -44 score = 8.5622 sequence = CTGTCAACC-(15)-AGTTTACAA Gene: VF_A0748: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	* Vibrio salmonicida LFI1238 Site: position = -44 score = 8.5622 sequence = CTGTCAACC-(15)-AGTTTACAA Gene: VSAL_II0861: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	* Vibrio angustum S14 Site: position = -35 score = 8.38403 sequence = CTGTCAACT-(15)-GGTTTACAT Gene: VAS14_01396: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	* Photobacterium profundum SS9 Site: position = -36 score = 5.75975 sequence = cgaTAAAtC-(16)-GGTTgAaAg Gene: PBPRA2330: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)

CRON 2.
bioB	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -93 score = 8.19401 sequence = ATGTAAACC-(15)-TGTTGACAG Gene: VC1112: Biotin synthase (EC 2.8.1.6)	* Vibrio vulnificus CMCP6 Site: position = -102 score = 7.76575 sequence = ATGTAAACT-(16)-TGTTGACAG Gene: VV1_2943: Biotin synthase (EC 2.8.1.6)	* Vibrio harveyi ATCC BAA-1116 Site: position = -73 score = 7.76575 sequence = ATGTAAACT-(16)-TGTTGACAG Gene: VIBHAR_01807: Biotin synthase (EC 2.8.1.6)	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -90 score = 7.76575 sequence = ATGTAAACT-(16)-TGTTGACAG Gene: VP1113: Biotin synthase (EC 2.8.1.6)	* Vibrio shilonii AK1 Site: position = -91 score = 7.21904 sequence = GTGTAAACT-(15)-TGTTGACAG Gene: VSAK1_00085: Biotin synthase (EC 2.8.1.6)	* Vibrio splendidus LGP32 Site: position = -121 score = 7.76575 sequence = ATGTAAACT-(16)-TGTTGACAG Gene: VS_2040: Biotin synthase (EC 2.8.1.6)	* Vibrio fischeri ES114 Site: position = -117 score = 8.5622 sequence = TTGTAAACT-(15)-GGTTGACAG Gene: VF_A1189: Biotin synthase (EC 2.8.1.6)	* Vibrio salmonicida LFI1238 Site: position = -95 score = 8.5622 sequence = TTGTAAACT-(15)-GGTTGACAG Gene: VSAL_II0860: Biotin synthase (EC 2.8.1.6)	* Vibrio angustum S14 Site: position = -213 score = 8.38403 sequence = ATGTAAACC-(15)-AGTTGACAG Gene: VAS14_01401: Biotin synthase (EC 2.8.1.6)	* Photobacterium profundum SS9 Site: position = -149 score = 7.53154 sequence = aTGTAAACC-(15)-taTTgACAg Gene: PBPRA2329: Biotin synthase (EC 2.8.1.6)	Biotin synthase (EC 2.8.1.6)
bioF	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC1113: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Vibrio vulnificus CMCP6 Gene: VV1_2942: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_01808: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Vibrio parahaemolyticus RIMD 2210633 Gene: VP1114: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Vibrio shilonii AK1 Gene: VSAK1_00090: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Vibrio splendidus LGP32 Gene: VS_2039: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Vibrio fischeri ES114 Gene: VF_A0747: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Vibrio salmonicida LFI1238 Gene: VSAL_II0859: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Vibrio angustum S14 Gene: VAS14_01406: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Photobacterium profundum SS9 Gene: PBPRA2328: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	8-amino-7-oxononanoate synthase (EC 2.3.1.47)
bioC	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC1114: Biotin synthesis protein bioC	Vibrio vulnificus CMCP6 Gene: VV1_2941: Biotin synthesis protein bioC	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_01809: Biotin synthesis protein bioC	Vibrio parahaemolyticus RIMD 2210633 Gene: VP1115: Biotin synthesis protein bioC	Vibrio shilonii AK1 Gene: VSAK1_00095: Biotin synthesis protein bioC	Vibrio splendidus LGP32 Gene: VS_2038: Biotin synthesis protein bioC	Vibrio fischeri ES114 Gene: VF_A0746: Biotin synthesis protein bioC	Vibrio salmonicida LFI1238 Gene: VSAL_II0858: Biotin synthesis protein bioC	Vibrio angustum S14 Gene: VAS14_01411: Biotin synthesis protein bioC	Photobacterium profundum SS9 Gene: PBPRA2327: Biotin synthesis protein bioC	Biotin synthesis protein bioC
bioD	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC1115: Dethiobiotin synthetase (EC 6.3.3.3)	Vibrio vulnificus CMCP6 Gene: VV1_2940: Dethiobiotin synthetase (EC 6.3.3.3)	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_01810: Dethiobiotin synthetase (EC 6.3.3.3)	Vibrio parahaemolyticus RIMD 2210633 Gene: VP1116: Dethiobiotin synthetase (EC 6.3.3.3)	Vibrio shilonii AK1 Gene: VSAK1_00100: Dethiobiotin synthetase (EC 6.3.3.3)	Vibrio splendidus LGP32 Gene: VS_2037: Dethiobiotin synthetase (EC 6.3.3.3)	Vibrio fischeri ES114 Gene: VF_A0745: Dethiobiotin synthetase (EC 6.3.3.3)	Vibrio salmonicida LFI1238 Gene: VSAL_II0857: Dethiobiotin synthetase (EC 6.3.3.3)	Vibrio angustum S14 Gene: VAS14_01416: Dethiobiotin synthetase (EC 6.3.3.3)	Photobacterium profundum SS9 Gene: PBPRA2326: Dethiobiotin synthetase (EC 6.3.3.3)	Dethiobiotin synthetase (EC 6.3.3.3)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog BirA - Vibrionales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --