Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NagC in Vibrio harveyi ATCC BAA-1116

Properties
Regulator type: Transcription factor
TF locus tag: VIBHAR_01334
Regulator family: ROK
Regulation mode: repressor (activator)
Biological process: N-acetylglucosamine utilization
Effector: N-acetylglucosamine-6-phosphate
Regulog: NagC - Vibrionales
Statistics of regulated genes:
- Genes 24
- Operons 17
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 199 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -152
Score: 4.7
Sequence: CTTATTTTTCAACGTTAAGTATG
Locus tag: VIBHAR_02628
Name: tfoX1
Funciton: DNA transformation protein TfoX1 (Sxy)
VIBHAR_02628
tfoX1
DNA transformation protein TfoX1 (Sxy)
Position: -107
Score: 5.5
Sequence: GTTATTTTTATTTATAAATTAAG
Locus tag: VIBHAR_05607
Name: chi1
Funciton: Chitinase (EC 3.2.1.14)
VIBHAR_05607
chi1
Chitinase (EC 3.2.1.14)
Position: -212
Score: 5.3
Sequence: TATTTTTTTAGAAAAAAAATAAG
Locus tag: VIBHAR_01313
Name: ybfM
Funciton: N-acetylglucosamine-regulated outer membrane porin
VIBHAR_01313
ybfM
N-acetylglucosamine-regulated outer membrane porin
Position: -97
Score: 4.9
Sequence: ATTAATTTTAGTTGTAAATTTAC
Locus tag: VIBHAR_00419
Name: glmU
Funciton: N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)
VIBHAR_00419
glmU
N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)
Position: -266
Score: 5.2
Sequence: CTTTTTTTGTTTAATAAAAAATG
Locus tag: VIBHAR_03018
Name: adh
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
VIBHAR_03018
adh
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Position: -197
Score: 4.8
Sequence: GTTATTTAGCGCCAAAAATAAAG
Locus tag: VIBHAR_01575
Name: glgC
Funciton: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
Locus tag: VIBHAR_01576
Name: glgA
Funciton: Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
VIBHAR_01575
glgC
Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
VIBHAR_01576
glgA
Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
Position: -39
Score: 4.7
Sequence: GTTATCTTTAATCAGAAATTAAG
Locus tag: VIBHAR_03049
Name: gapA
Funciton: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Locus tag: VIBHAR_03050
Name: aldE
Funciton: Aldose 1-epimerase
VIBHAR_03049
gapA
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
VIBHAR_03050
aldE
Aldose 1-epimerase
Position: -123
Score: 5
Sequence: TTAATTTTACGCTTAGAAATAAC
Locus tag: VIBHAR_01265
Name: hex
Funciton: Beta-hexosaminidase (EC 3.2.1.52)
VIBHAR_01265
hex
Beta-hexosaminidase (EC 3.2.1.52)
Position: -199
Score: 5.5
Sequence: ATTTTTTTGTATAATAAAATAAG
Position: -105
Score: 5
Sequence: TTTAATTTGCGGAGCAAAATTAA
Locus tag: VIBHAR_01336
Name: nagE1
Funciton: PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
VIBHAR_01336
nagE1
PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
Position: -321
Score: 5.1
Sequence: GTAATTTTGTTACTAAAAATAAC
Position: -287
Score: 5
Sequence: TTTTATTTACGCCTTAAAATTAA
Locus tag: VIBHAR_02900
Name: ptsG
Funciton: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
VIBHAR_02900
ptsG
PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
Position: -132
Score: 5.1
Sequence: TTTGATTTGAAGCAAAAAATAAA
Locus tag: VIBHAR_03526
Name: pyrG
Funciton: CTP synthase (EC 6.3.4.2)
Locus tag: VIBHAR_03525
Name: eno
Funciton: Enolase (EC 4.2.1.11)
VIBHAR_03526
pyrG
CTP synthase (EC 6.3.4.2)
VIBHAR_03525
eno
Enolase (EC 4.2.1.11)
Position: -238
Score: 4.2
Sequence: GTTAATTCAATATACGAAGTATC
Locus tag: VIBHAR_01580
Name: tfoX
Funciton: DNA transformation protein TfoX
VIBHAR_01580
tfoX
DNA transformation protein TfoX
Position: -207
Score: 5.5
Sequence: TTTATTTTTAGGTTCAAAATAAA
Locus tag: VIBHAR_01308
Name: ptsH
Funciton: Phosphocarrier protein of PTS system
Locus tag: VIBHAR_01307
Name: ptsI
Funciton: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
Locus tag: VIBHAR_01306
Name: crr
Funciton: PTS system, glucose-specific IIA component (EC 2.7.1.69)
VIBHAR_01308
ptsH
Phosphocarrier protein of PTS system
VIBHAR_01307
ptsI
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
VIBHAR_01306
crr
PTS system, glucose-specific IIA component (EC 2.7.1.69)
Position: -266
Score: 4.8
Sequence: TTTAATTTCACTTGCAAAATAAC
Position: -112
Score: 5.4
Sequence: TATTTTTTTTGAAAAAAAATAAG
Locus tag: VIBHAR_06955
Name: chiA
Funciton: Chitinase (EC 3.2.1.14)
VIBHAR_06955
chiA
Chitinase (EC 3.2.1.14)
Position: -128
Score: 5.3
Sequence: TTTATTTTAAGCCTTGAAATAAA
Locus tag: VIBHAR_03565
Name: pgk
Funciton: Phosphoglycerate kinase (EC 2.7.2.3)
Locus tag: VIBHAR_03564
Name: fbaA
Funciton: Fructose-bisphosphate aldolase class II (EC 4.1.2.13)
VIBHAR_03565
pgk
Phosphoglycerate kinase (EC 2.7.2.3)
VIBHAR_03564
fbaA
Fructose-bisphosphate aldolase class II (EC 4.1.2.13)
Position: -63
Score: 5.6
Sequence: CTTATTTTATAATGCAAATTAAT
Locus tag: VIBHAR_07002
Name: nagB
Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
VIBHAR_07002
nagB
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Position: -313
Score: 5.5
Sequence: CTTATTTTATTATACAAAAAAAT
Locus tag: VIBHAR_01335
Name: nagA
Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Locus tag: VIBHAR_01334
Name: nagC
Funciton: N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
VIBHAR_01335
nagA
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
VIBHAR_01334
nagC
N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
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