Regulog FabR - Vibrionales
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid biosynthesis |
| Effector: | Unsaturated acyl-ACP; Unsaturated acyl-CoA |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - FabR
- By taxonomy - Vibrionales
- By TF family - TetR
- By effector - Unsaturated acyl-ACP
- By effector - Unsaturated acyl-CoA
- By pathway - Fatty acid biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Vibrio cholerae O1 biovar eltor str. N16961 | 4 | 4 |
| Vibrio vulnificus CMCP6 | 5 | 5 |
| Vibrio harveyi ATCC BAA-1116 | 6 | 6 |
| Vibrio parahaemolyticus RIMD 2210633 | 6 | 6 |
| Vibrio shilonii AK1 | 4 | 4 |
| Vibrio splendidus LGP32 | 6 | 6 |
| Vibrio fischeri ES114 | 6 | 6 |
| Vibrio salmonicida LFI1238 | 6 | 6 |
| Vibrio angustum S14 | 5 | 5 |
| Photobacterium profundum SS9 | 6 | 6 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| lcfH |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -56 score = 4.69935 sequence = AATGTACACTTGTGCGCT Site: position = -31 score = 5.99445 sequence = GGCTTACAGGTGTAAGCT Gene: VC2484: putative long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
*
Vibrio vulnificus CMCP6 Site: position = -31 score = 5.35212 sequence = AGCTTACATGTGTAAGCC Gene: VV1_0649: putative long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -58 score = 4.63012 sequence = AGGTTACACTTGTGCGCT Site: position = -35 score = 4.95423 sequence = AGCTTACGCCTGTAAGCC Gene: VIBHAR_00824: putative long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -58 score = 4.84921 sequence = TGAGTACACTTGTTCGCT Site: position = -35 score = 4.95423 sequence = AGCTTACGCCTGTAAGCC Gene: VP0351: putative long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
|
*
Vibrio splendidus LGP32 Site: position = -54 score = 4.31325 sequence = GAGGTACACTTGTGCGCT Site: position = -30 score = 5.54267 sequence = AGCTTACAGGTGTAAGCC Gene: VS_0387: putative long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
*
Vibrio fischeri ES114 Site: position = -33 score = 5.53786 sequence = AGCTTACACCTGTAAGCC Gene: VF_2264: putative long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
*
Vibrio salmonicida LFI1238 Site: position = -33 score = 5.68365 sequence = AGCTTACAAGTGTAAGCC Gene: VSAL_I2750: putative long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
*
Vibrio angustum S14 Site: position = -35 score = 6.26728 sequence = AGCTTACAAGTGTAAGCT Gene: VAS14_08150: putative long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
*
Photobacterium profundum SS9 Site: position = -35 score = 6.26728 sequence = AGCTTACAAGTGTAAGCT Gene: PBPRA0424: putative long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
putative long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
| CRON 2. | |||||||||||
| OLE1 |
|
*
Vibrio vulnificus CMCP6 Site: position = -109 score = 6.28502 sequence = AGCGTACAACTGTTCGCT Site: position = -135 score = 5.39174 sequence = GACTTACACCTGTTCGCT Gene: VV20069: Fatty acid desaturase (EC 1.14.19.1) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -62 score = 5.67859 sequence = GACTTACACGTGTACGCT Site: position = -36 score = 5.5438 sequence = GGCGTACAGTTGTTAGCT Gene: VIBHAR_06094: Fatty acid desaturase (EC 1.14.19.1) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -63 score = 5.48187 sequence = GACTTACACGTGTTCGCT Site: position = -37 score = 5.40859 sequence = AGCGAACAGTTGTTAGCT Gene: VPA0707: Fatty acid desaturase (EC 1.14.19.1) |
*
Vibrio shilonii AK1 Site: position = -60 score = 5.67859 sequence = GACTTACACGTGTACGCT Site: position = -34 score = 5.60532 sequence = AGCGAACAGTTGTAAGCT Gene: VSAK1_01312: Fatty acid desaturase (EC 1.14.19.1) |
Gene: VS_II0610: Fatty acid desaturase (EC 1.14.19.1) |
*
Vibrio fischeri ES114 Site: position = -35 score = 5.92242 sequence = AGCGCACAACTGTACGCT Gene: VF_A0274: Fatty acid desaturase (EC 1.14.19.1) |
*
Vibrio salmonicida LFI1238 Site: position = -35 score = 5.92242 sequence = AGCGCACAACTGTACGCT Gene: VSAL_II0424: Fatty acid desaturase (EC 1.14.19.1) |
*
Vibrio angustum S14 Site: position = -38 score = 5.33381 sequence = GGCTTACATATGTACGCT Gene: VAS14_11699: Fatty acid desaturase (EC 1.14.19.1) |
*
Photobacterium profundum SS9 Site: position = -38 score = 5.44258 sequence = AGCGCACACATGTACGCT Gene: PBPRB0742: Fatty acid desaturase (EC 1.14.19.1) |
Fatty acid desaturase (EC 1.14.19.1) |
| CRON 3. | |||||||||||
| fadL |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -219 score = 4.85894 sequence = AGCGTACAAGCGTGCGAT Gene: VC1042: Long-chain fatty acid transport protein |
*
Vibrio vulnificus CMCP6 Site: position = -216 score = 4.66392 sequence = AGAGCACAACTGTTTGCT Gene: VV1_1971: Long-chain fatty acid transport protein |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -215 score = 4.75179 sequence = GGCGCACACGTGTAATCA Site: position = -183 score = 4.83722 sequence = GACTCACAGGTGTTCGCT Gene: VIBHAR_03125: Long-chain fatty acid transport protein |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -183 score = 4.83657 sequence = ACCTCACAGGTGTTCGCT Gene: VP2213: Long-chain fatty acid transport protein |
*
Vibrio shilonii AK1 Site: position = -182 score = 5.26481 sequence = TGTATACAGGTGTAAGCT Gene: VSAK1_03224: Long-chain fatty acid transport protein |
*
Vibrio splendidus LGP32 Site: position = -203 score = 5.14746 sequence = AGCTTACAACTGTAGCCT Site: position = -171 score = 4.34439 sequence = CAGCTACAGGTGTACGCT Gene: VS_0860: Long-chain fatty acid transport protein |
*
Vibrio fischeri ES114 Site: position = -237 score = 4.84038 sequence = AGCGTACACATATACCCT Site: position = -205 score = 4.71257 sequence = GACCTACACCTGTACGCC Gene: VF_1813: Long-chain fatty acid transport protein |
*
Vibrio salmonicida LFI1238 Site: position = -205 score = 5.42806 sequence = AACCTACACCTGTACGCT Site: position = -237 score = 4.90355 sequence = AGCGTACACGCGTACTCC Gene: VSAL_I2270: Long-chain fatty acid transport protein |
Gene: VAS14_17306: Long-chain fatty acid transport protein |
*
Photobacterium profundum SS9 Site: position = -222 score = 4.7672 sequence = AGAGTACAGTTGAACGCT Site: position = -190 score = 4.46805 sequence = CAGGTACACATGTACGCT Gene: PBPRA0957: Long-chain fatty acid transport protein |
Long-chain fatty acid transport protein |
| CRON 4. | |||||||||||
| COG2030 |
Gene: VCA0808: Putative acyl dehydratase, COG2030 |
Gene: VV20375: Putative acyl dehydratase, COG2030 |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -99 score = 4.46127 sequence = AGTAAACATGTGTTCGCC Gene: VIBHAR_05460: Putative acyl dehydratase, COG2030 |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -99 score = 4.47409 sequence = AGGATACATGTGTTCGCC Gene: VPA0603: Putative acyl dehydratase, COG2030 |
*
Vibrio shilonii AK1 Site: position = -95 score = 4.74996 sequence = AGAATACGCGTGTTCGCT Gene: VSAK1_14645: Putative acyl dehydratase, COG2030 |
*
Vibrio splendidus LGP32 Site: position = -78 score = 4.8466 sequence = GGCTAACACTTGTATGCT Gene: VS_II1142: Putative acyl dehydratase, COG2030 |
*
Vibrio fischeri ES114 Site: position = -115 score = 6.11962 sequence = AGCGAACAGGTGTAAGCT Gene: VF_A0699: Putative acyl dehydratase, COG2030 |
*
Vibrio salmonicida LFI1238 Site: position = -113 score = 5.55878 sequence = GGCGAACACTTGTAAGCT Gene: VSAL_II0497: Putative acyl dehydratase, COG2030 |
Gene: VAS14_13849: Putative acyl dehydratase, COG2030 |
Gene: PBPRB0808: Putative acyl dehydratase, COG2030 |
Putative acyl dehydratase, COG2030 |
| CRON 5. | |||||||||||
| plsC |
Gene: VC2513: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
2
Vibrio vulnificus CMCP6 Gene: VV1_2699: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Gene: VV1_0678: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
Gene: VIBHAR_03651: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
Gene: VP2657: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
Gene: VSAK1_02009: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
*2
Vibrio splendidus LGP32 Gene: VS_2743: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Site: position = -182 score = 5.76156 sequence = GGTGAACACGTGTAAGCT Gene: VS_0635: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
Gene: VF_0402: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
Gene: VSAL_I0512: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
*2
Vibrio angustum S14 Site: position = -31 score = 5.15121 sequence = AGCGAACGCTTGTACGCT Gene: VAS14_07980: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Gene: VAS14_13474: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
*2
Photobacterium profundum SS9 Site: position = -30 score = 5.15121 sequence = AGCGAACGCTTGTACGCT Gene: PBPRA0468: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Gene: PBPRB1496: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
| CRON 6. | |||||||||||
| hyIII |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -58 score = 5.85443 sequence = AGCTAACACCTGTAAGCT Gene: VC0040: COG1272: Predicted membrane protein hemolysin III homolog |
*
Vibrio vulnificus CMCP6 Site: position = -70 score = 6.21162 sequence = AGCTTACACGTGTAAGCT Gene: VV1_1043: COG1272: Predicted membrane protein hemolysin III homolog |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -20 score = 6.25584 sequence = AGCTTACACGTGTACGCT Gene: VIBHAR_00397: COG1272: Predicted membrane protein hemolysin III homolog |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -65 score = 6.25584 sequence = AGCTTACACGTGTACGCT Gene: VP3048: COG1272: Predicted membrane protein hemolysin III homolog |
*
Vibrio shilonii AK1 Site: position = -64 score = 4.64989 sequence = AGCTAACGCATGTTAGCT Gene: VSAK1_24425: COG1272: Predicted membrane protein hemolysin III homolog |
*
Vibrio splendidus LGP32 Site: position = -66 score = 6.21162 sequence = AGCTTACACGTGTAAGCT Gene: VS_3133: COG1272: Predicted membrane protein hemolysin III homolog |
*
Vibrio fischeri ES114 Site: position = -66 score = 6.22137 sequence = AGCTTACAACTGTACGCT Gene: VF_2548: COG1272: Predicted membrane protein hemolysin III homolog |
*
Vibrio salmonicida LFI1238 Site: position = -68 score = 5.21083 sequence = AGCTTACAGTTGTACTCT Gene: VSAL_I0049: COG1272: Predicted membrane protein hemolysin III homolog |
*
Vibrio angustum S14 Site: position = -71 score = 6.26728 sequence = AGCTTACAAGTGTAAGCT Gene: VAS14_22602: COG1272: Predicted membrane protein hemolysin III homolog |
*
Photobacterium profundum SS9 Site: position = -71 score = 5.67795 sequence = AGCTTACACGTGTACCCT Gene: PBPRA3584: COG1272: Predicted membrane protein hemolysin III homolog |
COG1272: Predicted membrane protein hemolysin III homolog |
| CRON 7. | |||||||||||
| fabA |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -52 score = 5.60974 sequence = GGCGTACACGTGTTCACT Gene: VC1483: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
*
Vibrio vulnificus CMCP6 Site: position = -53 score = 5.65147 sequence = AGCGTACACCTGTTCACT Gene: VV1_2629: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -52 score = 5.74159 sequence = AGCGTACACGTGTTCACT Gene: VIBHAR_02332: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -52 score = 5.74159 sequence = AGCGTACACGTGTTCACT Gene: VP1591: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
Gene: VSAK1_05230: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
*
Vibrio splendidus LGP32 Site: position = -46 score = 5.65147 sequence = AGCGTACACCTGTTCACT Gene: VS_1429: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
*
Vibrio fischeri ES114 Site: position = -53 score = 5.37495 sequence = TGAGTACAAGTGTTAGCT Gene: VF_1292: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
*
Vibrio salmonicida LFI1238 Site: position = -53 score = 6.37514 sequence = AGCGTACAAGTGTTCGCT Gene: VSAL_I1556: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
*
Vibrio angustum S14 Site: position = -56 score = 6.21162 sequence = AGCTTACACGTGTAAGCT Gene: VAS14_02868: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
*
Photobacterium profundum SS9 Site: position = -56 score = 6.51621 sequence = AGCGTACACGTGTACGCT Gene: PBPRA1773: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |