Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog FabR - Vibrionales

Properties
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid biosynthesis
Effector: Unsaturated acyl-ACP; Unsaturated acyl-CoA
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 67 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Vibrio cholerae O1 biovar eltor str. N16961 4 4
Vibrio vulnificus CMCP6 5 5
Vibrio harveyi ATCC BAA-1116 6 6
Vibrio parahaemolyticus RIMD 2210633 6 6
Vibrio shilonii AK1 4 4
Vibrio splendidus LGP32 6 6
Vibrio fischeri ES114 6 6
Vibrio salmonicida LFI1238 6 6
Vibrio angustum S14 5 5
Photobacterium profundum SS9 6 6
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
lcfH
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -56
score = 4.69935
sequence = AATGTACACTTGTGCGCT

Site:
position = -31
score = 5.99445
sequence = GGCTTACAGGTGTAAGCT

Gene: VC2484: putative long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Vibrio vulnificus CMCP6

Site:
position = -31
score = 5.35212
sequence = AGCTTACATGTGTAAGCC

Gene: VV1_0649: putative long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -58
score = 4.63012
sequence = AGGTTACACTTGTGCGCT

Site:
position = -35
score = 4.95423
sequence = AGCTTACGCCTGTAAGCC

Gene: VIBHAR_00824: putative long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -58
score = 4.84921
sequence = TGAGTACACTTGTTCGCT

Site:
position = -35
score = 4.95423
sequence = AGCTTACGCCTGTAAGCC

Gene: VP0351: putative long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
 
Vibrio shilonii AK1
*
Vibrio splendidus LGP32

Site:
position = -54
score = 4.31325
sequence = GAGGTACACTTGTGCGCT

Site:
position = -30
score = 5.54267
sequence = AGCTTACAGGTGTAAGCC

Gene: VS_0387: putative long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Vibrio fischeri ES114

Site:
position = -33
score = 5.53786
sequence = AGCTTACACCTGTAAGCC

Gene: VF_2264: putative long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Vibrio salmonicida LFI1238

Site:
position = -33
score = 5.68365
sequence = AGCTTACAAGTGTAAGCC

Gene: VSAL_I2750: putative long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Vibrio angustum S14

Site:
position = -35
score = 6.26728
sequence = AGCTTACAAGTGTAAGCT

Gene: VAS14_08150: putative long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Photobacterium profundum SS9

Site:
position = -35
score = 6.26728
sequence = AGCTTACAAGTGTAAGCT

Gene: PBPRA0424: putative long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
putative long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
 
CRON 2.
OLE1
 
Vibrio cholerae O1 biovar eltor str. N16961
*
Vibrio vulnificus CMCP6

Site:
position = -109
score = 6.28502
sequence = AGCGTACAACTGTTCGCT

Site:
position = -135
score = 5.39174
sequence = GACTTACACCTGTTCGCT

Gene: VV20069: Fatty acid desaturase (EC 1.14.19.1)
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -62
score = 5.67859
sequence = GACTTACACGTGTACGCT

Site:
position = -36
score = 5.5438
sequence = GGCGTACAGTTGTTAGCT

Gene: VIBHAR_06094: Fatty acid desaturase (EC 1.14.19.1)
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -63
score = 5.48187
sequence = GACTTACACGTGTTCGCT

Site:
position = -37
score = 5.40859
sequence = AGCGAACAGTTGTTAGCT

Gene: VPA0707: Fatty acid desaturase (EC 1.14.19.1)
*
Vibrio shilonii AK1

Site:
position = -60
score = 5.67859
sequence = GACTTACACGTGTACGCT

Site:
position = -34
score = 5.60532
sequence = AGCGAACAGTTGTAAGCT

Gene: VSAK1_01312: Fatty acid desaturase (EC 1.14.19.1)
 
Vibrio splendidus LGP32

Gene: VS_II0610: Fatty acid desaturase (EC 1.14.19.1)
*
Vibrio fischeri ES114

Site:
position = -35
score = 5.92242
sequence = AGCGCACAACTGTACGCT

Gene: VF_A0274: Fatty acid desaturase (EC 1.14.19.1)
*
Vibrio salmonicida LFI1238

Site:
position = -35
score = 5.92242
sequence = AGCGCACAACTGTACGCT

Gene: VSAL_II0424: Fatty acid desaturase (EC 1.14.19.1)
*
Vibrio angustum S14

Site:
position = -38
score = 5.33381
sequence = GGCTTACATATGTACGCT

Gene: VAS14_11699: Fatty acid desaturase (EC 1.14.19.1)
*
Photobacterium profundum SS9

Site:
position = -38
score = 5.44258
sequence = AGCGCACACATGTACGCT

Gene: PBPRB0742: Fatty acid desaturase (EC 1.14.19.1)
Fatty acid desaturase (EC 1.14.19.1)
 
CRON 3.
fadL
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -219
score = 4.85894
sequence = AGCGTACAAGCGTGCGAT

Gene: VC1042: Long-chain fatty acid transport protein
*
Vibrio vulnificus CMCP6

Site:
position = -216
score = 4.66392
sequence = AGAGCACAACTGTTTGCT

Gene: VV1_1971: Long-chain fatty acid transport protein
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -215
score = 4.75179
sequence = GGCGCACACGTGTAATCA

Site:
position = -183
score = 4.83722
sequence = GACTCACAGGTGTTCGCT

Gene: VIBHAR_03125: Long-chain fatty acid transport protein
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -183
score = 4.83657
sequence = ACCTCACAGGTGTTCGCT

Gene: VP2213: Long-chain fatty acid transport protein
*
Vibrio shilonii AK1

Site:
position = -182
score = 5.26481
sequence = TGTATACAGGTGTAAGCT

Gene: VSAK1_03224: Long-chain fatty acid transport protein
*
Vibrio splendidus LGP32

Site:
position = -203
score = 5.14746
sequence = AGCTTACAACTGTAGCCT

Site:
position = -171
score = 4.34439
sequence = CAGCTACAGGTGTACGCT

Gene: VS_0860: Long-chain fatty acid transport protein
*
Vibrio fischeri ES114

Site:
position = -237
score = 4.84038
sequence = AGCGTACACATATACCCT

Site:
position = -205
score = 4.71257
sequence = GACCTACACCTGTACGCC

Gene: VF_1813: Long-chain fatty acid transport protein
*
Vibrio salmonicida LFI1238

Site:
position = -205
score = 5.42806
sequence = AACCTACACCTGTACGCT

Site:
position = -237
score = 4.90355
sequence = AGCGTACACGCGTACTCC

Gene: VSAL_I2270: Long-chain fatty acid transport protein
 
Vibrio angustum S14

Gene: VAS14_17306: Long-chain fatty acid transport protein
*
Photobacterium profundum SS9

Site:
position = -222
score = 4.7672
sequence = AGAGTACAGTTGAACGCT

Site:
position = -190
score = 4.46805
sequence = CAGGTACACATGTACGCT

Gene: PBPRA0957: Long-chain fatty acid transport protein
Long-chain fatty acid transport protein
 
CRON 4.
COG2030
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VCA0808: Putative acyl dehydratase, COG2030
 
Vibrio vulnificus CMCP6

Gene: VV20375: Putative acyl dehydratase, COG2030
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -99
score = 4.46127
sequence = AGTAAACATGTGTTCGCC

Gene: VIBHAR_05460: Putative acyl dehydratase, COG2030
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -99
score = 4.47409
sequence = AGGATACATGTGTTCGCC

Gene: VPA0603: Putative acyl dehydratase, COG2030
*
Vibrio shilonii AK1

Site:
position = -95
score = 4.74996
sequence = AGAATACGCGTGTTCGCT

Gene: VSAK1_14645: Putative acyl dehydratase, COG2030
*
Vibrio splendidus LGP32

Site:
position = -78
score = 4.8466
sequence = GGCTAACACTTGTATGCT

Gene: VS_II1142: Putative acyl dehydratase, COG2030
*
Vibrio fischeri ES114

Site:
position = -115
score = 6.11962
sequence = AGCGAACAGGTGTAAGCT

Gene: VF_A0699: Putative acyl dehydratase, COG2030
*
Vibrio salmonicida LFI1238

Site:
position = -113
score = 5.55878
sequence = GGCGAACACTTGTAAGCT

Gene: VSAL_II0497: Putative acyl dehydratase, COG2030
 
Vibrio angustum S14

Gene: VAS14_13849: Putative acyl dehydratase, COG2030
 
Photobacterium profundum SS9

Gene: PBPRB0808: Putative acyl dehydratase, COG2030
Putative acyl dehydratase, COG2030
 
CRON 5.
plsC
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC2513: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
 2
Vibrio vulnificus CMCP6

Gene: VV1_2699: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)

Gene: VV1_0678: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_03651: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP2657: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
 
Vibrio shilonii AK1

Gene: VSAK1_02009: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
*2
Vibrio splendidus LGP32

Gene: VS_2743: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)

Site:
position = -182
score = 5.76156
sequence = GGTGAACACGTGTAAGCT

Gene: VS_0635: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
 
Vibrio fischeri ES114

Gene: VF_0402: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
 
Vibrio salmonicida LFI1238

Gene: VSAL_I0512: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
*2
Vibrio angustum S14

Site:
position = -31
score = 5.15121
sequence = AGCGAACGCTTGTACGCT

Gene: VAS14_07980: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)

Gene: VAS14_13474: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
*2
Photobacterium profundum SS9

Site:
position = -30
score = 5.15121
sequence = AGCGAACGCTTGTACGCT

Gene: PBPRA0468: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)

Gene: PBPRB1496: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
 
CRON 6.
hyIII
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -58
score = 5.85443
sequence = AGCTAACACCTGTAAGCT

Gene: VC0040: COG1272: Predicted membrane protein hemolysin III homolog
*
Vibrio vulnificus CMCP6

Site:
position = -70
score = 6.21162
sequence = AGCTTACACGTGTAAGCT

Gene: VV1_1043: COG1272: Predicted membrane protein hemolysin III homolog
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -20
score = 6.25584
sequence = AGCTTACACGTGTACGCT

Gene: VIBHAR_00397: COG1272: Predicted membrane protein hemolysin III homolog
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -65
score = 6.25584
sequence = AGCTTACACGTGTACGCT

Gene: VP3048: COG1272: Predicted membrane protein hemolysin III homolog
*
Vibrio shilonii AK1

Site:
position = -64
score = 4.64989
sequence = AGCTAACGCATGTTAGCT

Gene: VSAK1_24425: COG1272: Predicted membrane protein hemolysin III homolog
*
Vibrio splendidus LGP32

Site:
position = -66
score = 6.21162
sequence = AGCTTACACGTGTAAGCT

Gene: VS_3133: COG1272: Predicted membrane protein hemolysin III homolog
*
Vibrio fischeri ES114

Site:
position = -66
score = 6.22137
sequence = AGCTTACAACTGTACGCT

Gene: VF_2548: COG1272: Predicted membrane protein hemolysin III homolog
*
Vibrio salmonicida LFI1238

Site:
position = -68
score = 5.21083
sequence = AGCTTACAGTTGTACTCT

Gene: VSAL_I0049: COG1272: Predicted membrane protein hemolysin III homolog
*
Vibrio angustum S14

Site:
position = -71
score = 6.26728
sequence = AGCTTACAAGTGTAAGCT

Gene: VAS14_22602: COG1272: Predicted membrane protein hemolysin III homolog
*
Photobacterium profundum SS9

Site:
position = -71
score = 5.67795
sequence = AGCTTACACGTGTACCCT

Gene: PBPRA3584: COG1272: Predicted membrane protein hemolysin III homolog
COG1272: Predicted membrane protein hemolysin III homolog
 
CRON 7.
fabA
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -52
score = 5.60974
sequence = GGCGTACACGTGTTCACT

Gene: VC1483: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Vibrio vulnificus CMCP6

Site:
position = -53
score = 5.65147
sequence = AGCGTACACCTGTTCACT

Gene: VV1_2629: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -52
score = 5.74159
sequence = AGCGTACACGTGTTCACT

Gene: VIBHAR_02332: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -52
score = 5.74159
sequence = AGCGTACACGTGTTCACT

Gene: VP1591: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
 
Vibrio shilonii AK1

Gene: VSAK1_05230: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Vibrio splendidus LGP32

Site:
position = -46
score = 5.65147
sequence = AGCGTACACCTGTTCACT

Gene: VS_1429: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Vibrio fischeri ES114

Site:
position = -53
score = 5.37495
sequence = TGAGTACAAGTGTTAGCT

Gene: VF_1292: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Vibrio salmonicida LFI1238

Site:
position = -53
score = 6.37514
sequence = AGCGTACAAGTGTTCGCT

Gene: VSAL_I1556: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Vibrio angustum S14

Site:
position = -56
score = 6.21162
sequence = AGCTTACACGTGTAAGCT

Gene: VAS14_02868: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Photobacterium profundum SS9

Site:
position = -56
score = 6.51621
sequence = AGCGTACACGTGTACGCT

Gene: PBPRA1773: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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