Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Photobacterium profundum SS9

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AgaR N-acetylgalactosamine-6-phosphate; Galactosamine-6-phosphate N-acetylgalactosamine utilization 4 5
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 7 3
TF BirA Biotin Biotin biosynthesis 2 2
TF CelR Cellobiose-6-phosphate Cellobiose utilization 2 2
TF CelR3 Cellobiose-6-phosphate Cellobiose utilization 2 1
TF CueR Copper ion, (Cu+) Copper resistance 4 3
TF EbgR Beta-galactosides Galactosides utilization 2 5
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 8 7
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 7 6
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Fructose utilization 2 6
TF Fur Iron ion, (Fe2+) Iron homeostasis 43 35
TF GalR Galactose Galactose utilization 4 3
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 29 25
TF HutC cis-Urocanic acid Histidine utilization 2 2
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 3 4
TF KdgR 2-keto-3-deoxygluconate Pectin and polygalacturonate utlization 7 10
TF LexA DNA damage SOS response 15 14
TF LiuR Branched-chain amino acid degradation 4 6
TF MetJ S-adenosylmethionine Methionine metabolism; Methionine biosynthesis 13 22
TF MetR Homocysteine Methionine biosynthesis 4 8
TF ModE Molybdate Molybdenum homeostasis 1 1
TF NagC N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 25 20
TF NarP Nitrite; Nitrate Nitrate and nitrite respiration 21 14
TF NorR2 Nitric oxide Nitrosative stress response 2 3
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 4
TF NsrR Nitric oxide Nitrosative stress response 6 6
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 4 3
TF PBPRB0322 Metabolite transport 2 4
TF PdhR Pyruvate Pyruvate metabolism 1 1
TF PrpR 2-methylcitrate Methylcitrate utilization 1 4
TF PsrA Oleate Fatty acid degradation 10 8
TF PurR Hypoxanthine; Guanine Purine metabolism 17 15
TF RbsR Ribose Ribose utilization 1 1
TF RutR Uracil Pyrimidine utilization 1 2
TF SdaR D-glycerate Glycerate utilization 1 1
TF SiaR Glucosamine-6-phosphate Sialic acid utilization 5 6
TF SoxR Paraquat Superoxide stress response 2 2
TF TreR Trehalose-6-phosphate Trehalose utilization 1 2
TF TrpR Tryptophan Tryptophan biosynthesis 3 2
TF TtrR Tetrathionate Tetrathionate reduction 3 2
TF TyrR Tyrosine; Phenylalanine Aromatic amino acid metabolism 9 8
TF UxuR Glucuronate Glucuronate utilization 6 8
TF VEA_000881 Metabolite transport 1 1
TF VF_1255 Sugar utilization 1 1
TF VIBHAR_07005 Multidrug resistance; Multidrug efflux 1 1
TF VSAK1_09283 Metabolite transport 2 4
TF VSAK1_25095 Xanthine utilization; Allantoin utilization 9 11
TF YdcR 1 1
TF ZntR Zinc ion, (Zn2+) Zinc resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 5 4
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 1 1
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA GEMM_RNA_motif Cyclic diguanylate Second messenger response 3 3
RNA Glycine Glycine Glycine metabolism 1 2
RNA His_leader Histidine biosynthesis 1 1
RNA Leu_leader Branched-chain amino acid biosynthesis 1 1
RNA Lysine Lysine Lysine biosynthesis 3 3
RNA MOCO_RNA_motif Molybdenum Molybdopterin biosynthesis; Molybdenum homeostasis 1 1
RNA Purine Guanine; Adenine Purine metabolism 2 1
RNA S15 Ribosome biogenesis 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 4 3
RNA Thr_leader Threonine biosynthesis 1 1
RNA Trp_leader Tryptophan biosynthesis 1 1
RNA yybP-ykoY 2 2
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