Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Fur in Photobacterium profundum SS9

Properties
Regulator type: Transcription factor
TF locus tag: PBPRA1035
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Regulog: Fur - Vibrionales
Statistics of regulated genes:
- Genes 71
- Operons 28
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 447 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -160
Score: 5.4
Sequence: TAATGATAATGATTGTCATCT
Locus tag: PBPRA1567
Name: null
Funciton: putative hemolysin secretion ATP-binding protein
PBPRA1567
putative hemolysin secretion ATP-binding protein
Position: -77
Score: 5.7
Sequence: ACTTGATAATAATTCTCATTT
Position: -71
Score: 4.4
Sequence: TAATAATTCTCATTTGCATTT
Locus tag: PBPRB2013
Name: PF11449
Funciton: Predicted manganese transporter, 11 TMS
PBPRB2013
PF11449
Predicted manganese transporter, 11 TMS
Position: -141
Score: 4.9
Sequence: TAATACAAATAATAATTATTT
Position: -135
Score: 5.9
Sequence: AAATAATAATTATTTTCATTA
Locus tag: PBPRB1034
Name: null
Funciton: hypothetical protein
Locus tag: PBPRB1033
Name: null
Funciton: hypothetical protein
Locus tag: PBPRB1032
Name: null
Funciton: High-affinity iron permease
Locus tag: PBPRB1031
Name: null
Funciton: BarJ
Locus tag: PBPRB1030
Name: null
Funciton: hypothetical protein
Locus tag: PBPRB1029
Name: null
Funciton: hypothetical protein
PBPRB1034
hypothetical protein
PBPRB1033
hypothetical protein
PBPRB1032
High-affinity iron permease
PBPRB1031
BarJ
PBPRB1030
hypothetical protein
PBPRB1029
hypothetical protein
Position: -342
Score: 5.4
Sequence: GAATAATATCAATTATCATTT
Position: -287
Score: 5.8
Sequence: AAATAAGATTGATTATCATTT
Locus tag: PBPRA2102
Name: hutW
Funciton: Radical SAM family protein HutW, similar to coproporphyrinogen III oxidase, oxygen-independent, associated with heme uptake
Locus tag: PBPRA2101
Name: huvX
Funciton: Putative heme iron utilization protein
Locus tag: PBPRA2100
Name: hutZ
Funciton: Pyridoxamine 5'-phosphate oxidase-related putative heme iron utilization protein # hutZ
PBPRA2102
hutW
Radical SAM family protein HutW, similar to coproporphyrinogen III oxidase, oxygen-independent, associated with heme uptake
PBPRA2101
huvX
Putative heme iron utilization protein
PBPRA2100
hutZ
Pyridoxamine 5'-phosphate oxidase-related putative heme iron utilization protein # hutZ
Position: -45
Score: 5.4
Sequence: TAATGATAGTCATTATCATCT
Locus tag: PBPRA0166
Name: COG3315
Funciton: O-Methyltransferase involved in polyketide biosynthesis
PBPRA0166
COG3315
O-Methyltransferase involved in polyketide biosynthesis
Position: -54
Score: 5.4
Sequence: TAATGCGAGTAATTATCATTA
Locus tag: PBPRA2569
Name: sodA
Funciton: Manganese superoxide dismutase (EC 1.15.1.1)
Locus tag: PBPRA2570
Name: PF10952
Funciton: Protein of unknown function (DUF2753)
PBPRA2569
sodA
Manganese superoxide dismutase (EC 1.15.1.1)
PBPRA2570
PF10952
Protein of unknown function (DUF2753)
Position: -87
Score: 5.3
Sequence: CAATGAAAACGATTATCAATT
Locus tag: PBPRB1213
Name: PF03929
Funciton: Uncharacterized protein involved in iron uptake
Locus tag: PBPRB1212
Name: PF10029
Funciton: Predicted periplasmic protein (DUF2271)
Locus tag: PBPRB1211
Name: cbiM
Funciton: ABC-type Co2+ transport system, periplasmic component
Locus tag: PBPRB1210
Name: VIBHAR_06747
Funciton: conserved hypothetical protein
Locus tag: PBPRB1209
Name: VIBHAR_06746
Funciton: conserved hypothetical protein
Locus tag: PBPRB1208
Name: PF01297
Funciton: ABC transporter, metal-binding lipoprotein
Locus tag: PBPRB1207
Name: COG1121
Funciton: ABC-type Mn/Zn transport systems, ATPase component
Locus tag: PBPRB1206
Name: COG1108
Funciton: ABC-type Mn2+/Zn2+ transport systems, permease components
Locus tag: PBPRB1205
Name: COG0803
Funciton: ABC-type metal ion transport system, periplasmic component/surface adhesin
PBPRB1213
PF03929
Uncharacterized protein involved in iron uptake
PBPRB1212
PF10029
Predicted periplasmic protein (DUF2271)
PBPRB1211
cbiM
ABC-type Co2+ transport system, periplasmic component
PBPRB1210
VIBHAR_06747
conserved hypothetical protein
PBPRB1209
VIBHAR_06746
conserved hypothetical protein
PBPRB1208
PF01297
ABC transporter, metal-binding lipoprotein
PBPRB1207
COG1121
ABC-type Mn/Zn transport systems, ATPase component
PBPRB1206
COG1108
ABC-type Mn2+/Zn2+ transport systems, permease components
PBPRB1205
COG0803
ABC-type metal ion transport system, periplasmic component/surface adhesin
Position: -54
Score: 5.9
Sequence: AATTGATAATGAATATCATTA
Locus tag: PBPRB1172
Name: VV20793
Funciton: Conserved hypothetical protein
Locus tag: PBPRB1173
Name: VV20794
Funciton: ABC transporter, ATP-binding protein
PBPRB1172
VV20793
Conserved hypothetical protein
PBPRB1173
VV20794
ABC transporter, ATP-binding protein
Position: -79
Score: 5.3
Sequence: TAACGATAGTAATTCTCATTT
Locus tag: PBPRA1535
Name: hutA
Funciton: TonB-dependent heme and hemoglobin receptor HutA ; TonB-dependent hemin , ferrichrome receptor
PBPRA1535
hutA
TonB-dependent heme and hemoglobin receptor HutA ; TonB-dependent hemin , ferrichrome receptor
Position: -2
Score: 5.5
Sequence: TATTGATAATTGTTATCATTG
Locus tag: PBPRA3184
Name: fbpA
Funciton: Ferric iron ABC transporter, iron-binding protein
Locus tag: PBPRA3183
Name: fbpB
Funciton: Ferric iron ABC transporter, permease protein
Locus tag: PBPRA3182
Name: fbpC
Funciton: Ferric iron ABC transporter, ATP-binding protein
PBPRA3184
fbpA
Ferric iron ABC transporter, iron-binding protein
PBPRA3183
fbpB
Ferric iron ABC transporter, permease protein
PBPRA3182
fbpC
Ferric iron ABC transporter, ATP-binding protein
Position: -160
Score: 5.7
Sequence: AAATGCTAACAATTATCACTT
Locus tag: PBPRB1222
Name: fhuE
Funciton: Putative ferrichrome-iron receptor
PBPRB1222
fhuE
Putative ferrichrome-iron receptor
Position: -98
Score: 5.6
Sequence: AAATGAGATTCATTTTCAATT
Position: -20
Score: 4.4
Sequence: AAATACTATTGATGAGCAATA
Locus tag: PBPRB0694
Name: PF11932
Funciton: hypothetical protein
Locus tag: PBPRB0695
Name: exbB1
Funciton: Biopolymer transport protein ExbB-related protein
Locus tag: PBPRB0696
Name: exbB2
Funciton: TonB system transport protein ExbB2
Locus tag: PBPRB0697
Name: exbD2
Funciton: TonB system transport protein ExbD2
Locus tag: PBPRB0698
Name: tonB
Funciton: Periplasmic protein TonB
Locus tag: PBPRB0699
Name: VC1543
Funciton: TPR domain protein, putative component of TonB system
PBPRB0694
PF11932
hypothetical protein
PBPRB0695
exbB1
Biopolymer transport protein ExbB-related protein
PBPRB0696
exbB2
TonB system transport protein ExbB2
PBPRB0697
exbD2
TonB system transport protein ExbD2
PBPRB0698
tonB
Periplasmic protein TonB
PBPRB0699
VC1543
TPR domain protein, putative component of TonB system
Position: -19
Score: 4.3
Sequence: TTGTAAGAGCAATTATTATTT
Locus tag: PBPRA2593
Name: COG0778
Funciton: Nitroreductase
PBPRA2593
COG0778
Nitroreductase
Position: -63
Score: 5.7
Sequence: TAATGCGAATGAATATCATTT
Locus tag: PBPRB0614
Name: VCA1041
Funciton: Phosphomannomutase
PBPRB0614
VCA1041
Phosphomannomutase
Position: -45
Score: 5.9
Sequence: AAATGATAATGGTTTTCATTA
Locus tag: PBPRB1812
Name: viuB
Funciton: Vibriobactin utilization protein ViuB
PBPRB1812
viuB
Vibriobactin utilization protein ViuB
Position: -46
Score: 4.6
Sequence: TAATACGAATTAGAATCATTA
Locus tag: PBPRB1864
Name: COG2910
Funciton: Putative NADH-flavin reductase
PBPRB1864
COG2910
Putative NADH-flavin reductase
Position: -97
Score: 5.2
Sequence: AAACTATAATAGTTATCATTT
Locus tag: PBPRB1905
Name: feoA
Funciton: Ferrous iron transport protein A
Locus tag: PBPRB1904
Name: feoB
Funciton: Ferrous iron transport protein B
PBPRB1905
feoA
Ferrous iron transport protein A
PBPRB1904
feoB
Ferrous iron transport protein B
Position: -138
Score: 4.7
Sequence: CAATGATAGTAGTTATCATTG
Locus tag: PBPRA1566
Name: fhuA
Funciton: TonB-dependent outer membrane receptor for iron siderophores
Locus tag: PBPRA1565
Name: fhuC
Funciton: Ferrichrome transport ATP-binding protein FhuC
Locus tag: PBPRA1564
Name: fhuD
Funciton: Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3)
PBPRA1566
fhuA
TonB-dependent outer membrane receptor for iron siderophores
PBPRA1565
fhuC
Ferrichrome transport ATP-binding protein FhuC
PBPRA1564
fhuD
Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3)
Position: -121
Score: 5.3
Sequence: GATTGATAACTATTTTTATTT
Locus tag: PBPRB1816
Name: PBPRB1816
Funciton: Ferrichrome transport system permease protein FhuB (TC 3.A.1.14.3)
Locus tag: PBPRB1815
Name: PBPRB1815
Funciton: ABC-type Fe3+-siderophore transport system, permease component
Locus tag: PBPRB1814
Name: VIBHAR_01766
Funciton: Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3)
PBPRB1816
PBPRB1816
Ferrichrome transport system permease protein FhuB (TC 3.A.1.14.3)
PBPRB1815
PBPRB1815
ABC-type Fe3+-siderophore transport system, permease component
PBPRB1814
VIBHAR_01766
Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3)
Position: -69
Score: 5.3
Sequence: AAATAAAAATAGTTATCAATC
Locus tag: PBPRB1817
Name: fecB
Funciton: Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1)
PBPRB1817
fecB
Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1)
Position: -59
Score: 5.1
Sequence: AAATGCAAACGATTCTCGTTT
Locus tag: PBPRA0317
Name: bfd
Funciton: Bacterioferritin-associated ferredoxin
Locus tag: PBPRA0318
Name: bfr
Funciton: Bacterioferritin
PBPRA0317
bfd
Bacterioferritin-associated ferredoxin
PBPRA0318
bfr
Bacterioferritin
Position: -73
Score: 5
Sequence: AAATGAGAATCATTCTTGATC
Locus tag: PBPRB0979
Name: ptrB
Funciton: Protease II (EC 3.4.21.83)
Locus tag: PBPRB0978
Name: hutR
Funciton: TonB-dependent heme receptor HutR
Locus tag: PBPRB0977
Name: VCA0065
Funciton: Hypothetical with regulatory P domain of a subtilisin-like proprotein convertase
Locus tag: PBPRB0976
Name: VCA0066
Funciton: Hypothetical protein in cluster with HutR, VCA0066 homolog
Locus tag: PBPRB0975
Name: null
Funciton: hypothetical protein
PBPRB0979
ptrB
Protease II (EC 3.4.21.83)
PBPRB0978
hutR
TonB-dependent heme receptor HutR
PBPRB0977
VCA0065
Hypothetical with regulatory P domain of a subtilisin-like proprotein convertase
PBPRB0976
VCA0066
Hypothetical protein in cluster with HutR, VCA0066 homolog
PBPRB0975
hypothetical protein
Position: -196
Score: 5.8
Sequence: AAATGATAATCAATCTTATTT
Position: -141
Score: 5.4
Sequence: AAATGATAATTGATATTATTC
Locus tag: PBPRA2103
Name: tonB-hmu
Funciton: Periplasmic protein TonB involved in hemin uptake
Locus tag: PBPRA2104
Name: exbB-hmu
Funciton: TonB system transport protein ExbB involved in hemin uptake
Locus tag: PBPRA2105
Name: exbD-hmu
Funciton: TonB system transport protein ExbD involved in hemin uptake
Locus tag: PBPRA2106
Name: hmuT
Funciton: Hemin ABC transporter, periplasmic hemin-binding protein
Locus tag: PBPRA2107
Name: hmuU
Funciton: Hemin ABC transporter, permease component
Locus tag: PBPRA2108
Name: hmuV
Funciton: Hemin ABC transporter, ATP-binding subunit
PBPRA2103
tonB-hmu
Periplasmic protein TonB involved in hemin uptake
PBPRA2104
exbB-hmu
TonB system transport protein ExbB involved in hemin uptake
PBPRA2105
exbD-hmu
TonB system transport protein ExbD involved in hemin uptake
PBPRA2106
hmuT
Hemin ABC transporter, periplasmic hemin-binding protein
PBPRA2107
hmuU
Hemin ABC transporter, permease component
PBPRA2108
hmuV
Hemin ABC transporter, ATP-binding subunit
Position: -208
Score: 4.8
Sequence: TAATGAGAATGGGTGTCAATT
Position: -191
Score: 5.1
Sequence: AATTGCAAATGGTTTTTATTT
Locus tag: PBPRA1259
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: PBPRA1260
Name: nfrC
Funciton: Putative nitrite reductase, Fe-S protein (NrfC)
Locus tag: PBPRA1261
Name: nrfD
Funciton: Putative nitrate reductase, formate dependent (NrfD)
PBPRA1259
nrfB
Cytochrome c-type protein NrfB precursor
PBPRA1260
nfrC
Putative nitrite reductase, Fe-S protein (NrfC)
PBPRA1261
nrfD
Putative nitrate reductase, formate dependent (NrfD)
Position: -190
Score: 5.4
Sequence: TATTGATATTGATTATCAGTT
Position: -167
Score: 4.9
Sequence: ATTTGATAATCAATATCAACT
Locus tag: PBPRA2792
Name: COG3016
Funciton: Conserved hypothetical iron-regulated protein
PBPRA2792
COG3016
Conserved hypothetical iron-regulated protein
Position: -19
Score: 5.2
Sequence: AACTGATAATGATTAGCGTTT
Locus tag: PBPRA3532
Name: VC0074
Funciton: conserved hypothetical protein
PBPRA3532
VC0074
conserved hypothetical protein
Position: -43
Score: 5.5
Sequence: TAACGATAATAATTATCATTC
Locus tag: PBPRB1825
Name: COG4771
Funciton: Outer membrane receptor for ferrienterochelin, TonB-dependent
PBPRB1825
COG4771
Outer membrane receptor for ferrienterochelin, TonB-dependent
Position: -36
Score: 5.6
Sequence: AAATACTAATAATTCTTATTA
Locus tag: PBPRA1058
Name: feoA
Funciton: Ferrous iron transport protein A
Locus tag: PBPRA1059
Name: feoB
Funciton: Ferrous iron transport protein B
Locus tag: PBPRA1060
Name: feoC
Funciton: Ferrous iron transport protein C
PBPRA1058
feoA
Ferrous iron transport protein A
PBPRA1059
feoB
Ferrous iron transport protein B
PBPRA1060
feoC
Ferrous iron transport protein C
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