Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NagC in Photobacterium profundum SS9

Properties
Regulator type: Transcription factor
TF locus tag: PBPRA1029
Regulator family: ROK
Regulation mode: repressor (activator)
Biological process: N-acetylglucosamine utilization
Effector: N-acetylglucosamine-6-phosphate
Regulog: NagC - Vibrionales
Statistics of regulated genes:
- Genes 25
- Operons 17
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 199 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -131
Score: 5.3
Sequence: CTTATTTTCTATCGAGAATTAAG
Locus tag: PBPRB0765
Name: nagA
Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
PBPRB0765
nagA
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Position: -171
Score: 4.8
Sequence: TTAATTTCGCTCCGCAAATTAAA
Position: -77
Score: 5
Sequence: ATTATTTTATGATTCGAAACAAA
Locus tag: PBPRA1031
Name: nagB
Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Locus tag: PBPRA1030
Name: nagA
Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Locus tag: PBPRA1029
Name: nagC
Funciton: N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
PBPRA1031
nagB
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
PBPRA1030
nagA
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
PBPRA1029
nagC
N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
Position: -60
Score: 5.5
Sequence: CTTATTTTACAATGAAAATAATG
Locus tag: PBPRB0360
Name: nagB
Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
PBPRB0360
nagB
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Position: -163
Score: 4.8
Sequence: CTTATTTCGCGTTAAATAATATG
Locus tag: PBPRA1207
Name: tfoX1
Funciton: DNA transformation protein TfoX1 (Sxy)
PBPRA1207
tfoX1
DNA transformation protein TfoX1 (Sxy)
Position: -108
Score: 5.5
Sequence: GATATTTTTAAACGAAAAATAAG
Locus tag: PBPRA2603
Name: aldE
Funciton: Aldose 1-epimerase
PBPRA2603
aldE
Aldose 1-epimerase
Position: -105
Score: 4.9
Sequence: TATTTTTCGAAGAATAAATTAAG
Locus tag: PBPRA0868
Name: ybfM
Funciton: N-acetylglucosamine-regulated outer membrane porin
PBPRA0868
ybfM
N-acetylglucosamine-regulated outer membrane porin
Position: -204
Score: 4.7
Sequence: TATTTTTTAAACTTTAAACTAAC
Locus tag: PBPRA0556
Name: grcA
Funciton: autonomous glycyl radical cofactor GrcA
PBPRA0556
grcA
autonomous glycyl radical cofactor GrcA
Position: -338
Score: 4.9
Sequence: CATAATTCGCGATAAAAAAATAG
Position: -293
Score: 5.1
Sequence: ATTATTTCACGGCGTGAAATAAG
Locus tag: PBPRA2790
Name: ompC
Funciton: Predicted OmpC-like chitoporin
PBPRA2790
ompC
Predicted OmpC-like chitoporin
Position: -250
Score: 5.3
Sequence: CTTATATTTCATCAAAAAATAAG
Locus tag: PBPRA1724
Name: gapB
Funciton: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
PBPRA1724
gapB
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Position: -202
Score: 5
Sequence: TTTGTTTCGAATCATAAAATAAT
Position: -108
Score: 4.8
Sequence: TTTAATTTGCGGAGCGAAATTAA
Locus tag: PBPRA1032
Name: nagE2
Funciton: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
Locus tag: PBPRA1033
Name: hex
Funciton: Beta-hexosaminidase (EC 3.2.1.52)
PBPRA1032
nagE2
PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
PBPRA1033
hex
Beta-hexosaminidase (EC 3.2.1.52)
Position: -335
Score: 4.3
Sequence: GTATCTTCGTTACGTAAAATAAC
Locus tag: PBPRA1203
Name: ptsG
Funciton: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
PBPRA1203
ptsG
PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
Position: -129
Score: 4.8
Sequence: ATTGATTTGAGACAAAAAAAAAC
Locus tag: PBPRA3080
Name: pyrG
Funciton: CTP synthase (EC 6.3.4.2)
Locus tag: PBPRA3079
Name: eno
Funciton: Enolase (EC 4.2.1.11)
PBPRA3080
pyrG
CTP synthase (EC 6.3.4.2)
PBPRA3079
eno
Enolase (EC 4.2.1.11)
Position: -134
Score: 4.6
Sequence: TTTTATTTCACTCAAAAATTAAC
Locus tag: PBPRB0407
Name: mcp2
Funciton: N-acetylglucosamine regulated methyl-accepting chemotaxis protein
PBPRB0407
mcp2
N-acetylglucosamine regulated methyl-accepting chemotaxis protein
Position: -30
Score: 4.7
Sequence: GTTGTTTTTTTCTATAAAACAAC
Locus tag: PBPRB0312
Name: cbp
Funciton: Chitin binding protein
PBPRB0312
cbp
Chitin binding protein
Position: -169
Score: 4.7
Sequence: TATTATTTGTGTCTTAAATAATA
Locus tag: PBPRA2110
Name: tfoX
Funciton: DNA transformation protein TfoX
PBPRA2110
tfoX
DNA transformation protein TfoX
Position: -216
Score: 5.2
Sequence: TTTATTTTAAGCATCGAAATAAA
Locus tag: PBPRA0863
Name: ptsH
Funciton: Phosphocarrier protein of PTS system
Locus tag: PBPRA0862
Name: ptsI
Funciton: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
Locus tag: PBPRA0861
Name: crr
Funciton: PTS system, glucose-specific IIA component (EC 2.7.1.69)
PBPRA0863
ptsH
Phosphocarrier protein of PTS system
PBPRA0862
ptsI
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
PBPRA0861
crr
PTS system, glucose-specific IIA component (EC 2.7.1.69)
Position: -232
Score: 5.2
Sequence: TTTAATTTGCAGTGTGAAAAAAA
Locus tag: PBPRA3132
Name: epd
Funciton: D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.72)
Locus tag: PBPRA3131
Name: pgk
Funciton: Phosphoglycerate kinase (EC 2.7.2.3)
Locus tag: PBPRA3130
Name: fbaA
Funciton: Fructose-bisphosphate aldolase class II (EC 4.1.2.13)
PBPRA3132
epd
D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.72)
PBPRA3131
pgk
Phosphoglycerate kinase (EC 2.7.2.3)
PBPRA3130
fbaA
Fructose-bisphosphate aldolase class II (EC 4.1.2.13)
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