Regulon of UxuR in Photobacterium profundum SS9
| Regulator type: | Transcription factor |
| TF locus tag: | PBPRB1510, PBPRB1875 |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Glucuronate utilization |
| Effector: | Glucuronate |
| Regulog: | UxuR - Vibrionales |
| Statistics of regulated genes: | |
| - Genes | 9 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - ExuR/UxuR
- By taxonomy - Vibrionales
- By TF family - GntR/Others
- By effector - Glucuronate
- By pathway - Glucuronate utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -61
Score: 4.4 Sequence: CCATAGGTTCACCAATCT
Locus tag: PBPRB1515
Name: uxaC Funciton: Uronate isomerase (EC 5.3.1.12)
Locus tag: PBPRB1516
Name: uxaB Funciton: Altronate oxidoreductase (EC 1.1.1.58)
Locus tag: PBPRB1517
Name: uxaA Funciton: Altronate hydrolase (EC 4.2.1.7) |
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uxaC
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Uronate isomerase (EC 5.3.1.12)
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uxaB
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Altronate oxidoreductase (EC 1.1.1.58)
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uxaA
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Altronate hydrolase (EC 4.2.1.7)
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Position: -201
Score: 5.1 Sequence: CAATTGGTTGACCTATAT
Position: -167
Score: 5.6 Sequence: ATATTGGTCAACCAATTC
Position: -54
Score: 5.2 Sequence: ACATTGGTTAACCAAACG
Locus tag: PBPRB1878
Name: uxuQ Funciton: predicted TRAP-type glucuronate transporter, small membrane subunit
Locus tag: PBPRB1879
Name: uxuM Funciton: predicted TRAP-type glucuronate transporter, large membrane subunit
Locus tag: PBPRB1880
Name: uxuB Funciton: D-mannonate oxidoreductase (EC 1.1.1.57) |
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uxuQ
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predicted TRAP-type glucuronate transporter, small membrane subunit
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uxuM
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predicted TRAP-type glucuronate transporter, large membrane subunit
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uxuB
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D-mannonate oxidoreductase (EC 1.1.1.57)
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Position: -153
Score: 5.4 Sequence: AAAGAGGTTGACCAATTT
Locus tag: PBPRB1875
Name: uxuR Funciton: Uxu operon transcriptional regulator, GntR family
Locus tag: PBPRB1874
Name: uxuA Funciton: Mannonate dehydratase (EC 4.2.1.8) |
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uxuR
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Uxu operon transcriptional regulator, GntR family
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uxuA
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Mannonate dehydratase (EC 4.2.1.8)
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Position: -192
Score: 4.6 Sequence: CGTTTGGTTAACCAATGT
Position: -79
Score: 5.7 Sequence: GAATTGGTTGACCAATAT
Position: -45
Score: 5.2 Sequence: ATATAGGTCAACCAATTG
Locus tag: PBPRB1877
Name: uxuP Funciton: predicted TRAP-type glucuronate transporter, periplasmic subunit |
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uxuP
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predicted TRAP-type glucuronate transporter, periplasmic subunit
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |