Regulog UxuR - Vibrionales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Glucuronate utilization
Effector:	Glucuronate
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 28 sites [see more]

Member of regulog collections

By trascription factor - ExuR/UxuR
By taxonomy - Vibrionales
By TF family - GntR/Others
By effector - Glucuronate
By pathway - Glucuronate utilization

Statistics of regulated genes
Genome	Genes	Operons
Vibrio cholerae O1 biovar eltor str. N16961
Vibrio vulnificus CMCP6	10	3
Vibrio harveyi ATCC BAA-1116
Vibrio parahaemolyticus RIMD 2210633	10	4
Vibrio shilonii AK1	12	3
Vibrio splendidus LGP32
Vibrio fischeri ES114
Vibrio salmonicida LFI1238
Vibrio angustum S14
Photobacterium profundum SS9	9	4

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
uxuR	Vibrio cholerae O1 biovar eltor str. N16961	* Vibrio vulnificus CMCP6 Site: position = -50 score = 5.45126 sequence = ATATAGGTTGACCAATTA Gene: VV21065: Uxu operon transcriptional regulator, GntR family	Vibrio harveyi ATCC BAA-1116	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -50 score = 5.04886 sequence = ATAGAGGTTGACCAATTG Gene: VPA1701: Uxu operon transcriptional regulator, GntR family	* Vibrio shilonii AK1 Site: position = -77 score = 5.51938 sequence = TAATTGGTCAACCAATTG Site: position = -65 score = 5.79306 sequence = CAATTGGTTGACCAATTT Gene: VSAK1_20694: Uxu operon transcriptional regulator, GntR family	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	* Photobacterium profundum SS9 Site: position = -153 score = 5.4112 sequence = AAAGAGGTTGACCAATTT Gene: PBPRB1875: Uxu operon transcriptional regulator, GntR family	Uxu operon transcriptional regulator, GntR family
uxuA	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV21064: Mannonate dehydratase (EC 4.2.1.8)	Vibrio harveyi ATCC BAA-1116	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -140 score = 4.88163 sequence = AAAACGGTTAACCACATT Gene: VPA1700: Mannonate dehydratase (EC 4.2.1.8)	Vibrio shilonii AK1 Gene: VSAK1_20699: Mannonate dehydratase (EC 4.2.1.8)	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRB1874: Mannonate dehydratase (EC 4.2.1.8)	Mannonate dehydratase (EC 4.2.1.8)

CRON 2.
uxuQ	Vibrio cholerae O1 biovar eltor str. N16961	* Vibrio vulnificus CMCP6 Site: position = -169 score = 5.91725 sequence = AAATTGGTTAACCAATCT Site: position = -54 score = 5.63879 sequence = ACATTGGTAAACCAATTG Site: position = -203 score = 5.28074 sequence = AAATTGATTGACCAAAAT Gene: VV21067: predicted TRAP-type glucuronate transporter, small membrane subunit	Vibrio harveyi ATCC BAA-1116	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -163 score = 6.02139 sequence = AAATTGGTTAACCAATTC Site: position = -197 score = 5.28074 sequence = AAATTGATTGACCAAAAT Site: position = -48 score = 5.63879 sequence = ACATTGGTAAACCAATTG Gene: VPA1703: predicted TRAP-type glucuronate transporter, small membrane subunit	* Vibrio shilonii AK1 Site: position = -168 score = 5.26327 sequence = GAATTGGTTGACCAATGT Gene: VSAK1_20679: predicted TRAP-type glucuronate transporter, small membrane subunit	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	* Photobacterium profundum SS9 Site: position = -54 score = 5.21432 sequence = ACATTGGTTAACCAAACG Site: position = -167 score = 5.58338 sequence = ATATTGGTCAACCAATTC Site: position = -201 score = 5.05461 sequence = CAATTGGTTGACCTATAT Gene: PBPRB1878: predicted TRAP-type glucuronate transporter, small membrane subunit	predicted TRAP-type glucuronate transporter, small membrane subunit
uxuM	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV21068: predicted TRAP-type glucuronate transporter, large membrane subunit	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633 Gene: VPA1704: predicted TRAP-type glucuronate transporter, large membrane subunit	Vibrio shilonii AK1 Gene: VSAK1_20674: predicted TRAP-type glucuronate transporter, large membrane subunit	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRB1879: predicted TRAP-type glucuronate transporter, large membrane subunit	predicted TRAP-type glucuronate transporter, large membrane subunit
VSAK1_20669	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1 Gene: VSAK1_20669: hypothetical protein	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	hypothetical protein
uxuB	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV21069: D-mannonate oxidoreductase (EC 1.1.1.57)	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633 Gene: VPA1705: D-mannonate oxidoreductase (EC 1.1.1.57)	Vibrio shilonii AK1 Gene: VSAK1_20664: D-mannonate oxidoreductase (EC 1.1.1.57)	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRB1880: D-mannonate oxidoreductase (EC 1.1.1.57)	D-mannonate oxidoreductase (EC 1.1.1.57)
uxaC	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV21070: Uronate isomerase (EC 5.3.1.12)	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633 Gene: VPA1706: Uronate isomerase (EC 5.3.1.12)	Vibrio shilonii AK1 Gene: VSAK1_20659: Uronate isomerase (EC 5.3.1.12)	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	* Photobacterium profundum SS9 Site: position = -61 score = 4.42803 sequence = CCATAGGTTCACCAATCT Gene: PBPRB1515: Uronate isomerase (EC 5.3.1.12)	Uronate isomerase (EC 5.3.1.12)
kdgK	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV21071: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633 Gene: VPA1707: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	Vibrio shilonii AK1 Gene: VSAK1_20654: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
eda	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV21072: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633 Gene: VPA1708: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	Vibrio shilonii AK1 Gene: VSAK1_20649: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
VIBHAR_05661	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1 Gene: VSAK1_20644: hypothetical protein	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Glutamate racemase (EC 5.1.1.3)
ygjV	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV21073: Conserved hypothetical protein	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633 Gene: VPA1709: Conserved hypothetical protein	Vibrio shilonii AK1 Gene: VSAK1_20639: Conserved hypothetical protein	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRB1884: Conserved hypothetical protein	Conserved hypothetical protein
uxaB	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRB1516: Altronate oxidoreductase (EC 1.1.1.58)	Altronate oxidoreductase (EC 1.1.1.58)
uxaA	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRB1517: Altronate hydrolase (EC 4.2.1.7)	Altronate hydrolase (EC 4.2.1.7)

CRON 3.
uxuP	Vibrio cholerae O1 biovar eltor str. N16961	* Vibrio vulnificus CMCP6 Site: position = -182 score = 5.05865 sequence = ATTTTGGTCAATCAATTT Site: position = -78 score = 4.57359 sequence = ACATTGGACAACCAATCC Site: position = -216 score = 5.8229 sequence = AGATTGGTTAACCAATTT Gene: VV21066: predicted TRAP-type glucuronate transporter, periplasmic subunit	Vibrio harveyi ATCC BAA-1116	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -33 score = 5.08358 sequence = ATATTGGATAACCAATCC Site: position = -136 score = 5.05865 sequence = ATTTTGGTCAATCAATTT Site: position = -170 score = 5.97987 sequence = GAATTGGTTAACCAATTT Gene: VPA1702: predicted TRAP-type glucuronate transporter, periplasmic subunit	* Vibrio shilonii AK1 Site: position = -158 score = 5.40591 sequence = ACATTGGTCAACCAATTC Site: position = -66 score = 5.39759 sequence = TAATTGGTTAACCGAATT Gene: VSAK1_20684: predicted TRAP-type glucuronate transporter, periplasmic subunit	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	2 Photobacterium profundum SS9* Gene: PBPRB1876: predicted TRAP-type glucuronate transporter, periplasmic subunit Site: position = -192 score = 4.57464 sequence = CGTTTGGTTAACCAATGT Site: position = -45 score = 5.1812 sequence = ATATAGGTCAACCAATTG Site: position = -79 score = 5.69831 sequence = GAATTGGTTGACCAATAT Gene: PBPRB1877: predicted TRAP-type glucuronate transporter, periplasmic subunit	predicted TRAP-type glucuronate transporter, periplasmic subunit

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog UxuR - Vibrionales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --