Regulog UxuR - Vibrionales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Glucuronate utilization |
| Effector: | Glucuronate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - ExuR/UxuR
- By taxonomy - Vibrionales
- By TF family - GntR/Others
- By effector - Glucuronate
- By pathway - Glucuronate utilization
| Genome | Genes | Operons |
|---|---|---|
| Vibrio cholerae O1 biovar eltor str. N16961 | ||
| Vibrio vulnificus CMCP6 | 10 | 3 |
| Vibrio harveyi ATCC BAA-1116 | ||
| Vibrio parahaemolyticus RIMD 2210633 | 10 | 4 |
| Vibrio shilonii AK1 | 12 | 3 |
| Vibrio splendidus LGP32 | ||
| Vibrio fischeri ES114 | ||
| Vibrio salmonicida LFI1238 | ||
| Vibrio angustum S14 | ||
| Photobacterium profundum SS9 | 9 | 4 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| uxuR |
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*
Vibrio vulnificus CMCP6 Site: position = -50 score = 5.45126 sequence = ATATAGGTTGACCAATTA Gene: VV21065: Uxu operon transcriptional regulator, GntR family |
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Vibrio parahaemolyticus RIMD 2210633 Site: position = -50 score = 5.04886 sequence = ATAGAGGTTGACCAATTG Gene: VPA1701: Uxu operon transcriptional regulator, GntR family |
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Vibrio shilonii AK1 Site: position = -77 score = 5.51938 sequence = TAATTGGTCAACCAATTG Site: position = -65 score = 5.79306 sequence = CAATTGGTTGACCAATTT Gene: VSAK1_20694: Uxu operon transcriptional regulator, GntR family |
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*
Photobacterium profundum SS9 Site: position = -153 score = 5.4112 sequence = AAAGAGGTTGACCAATTT Gene: PBPRB1875: Uxu operon transcriptional regulator, GntR family |
Uxu operon transcriptional regulator, GntR family |
| uxuA |
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Gene: VV21064: Mannonate dehydratase (EC 4.2.1.8) |
|
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -140 score = 4.88163 sequence = AAAACGGTTAACCACATT Gene: VPA1700: Mannonate dehydratase (EC 4.2.1.8) |
Gene: VSAK1_20699: Mannonate dehydratase (EC 4.2.1.8) |
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Gene: PBPRB1874: Mannonate dehydratase (EC 4.2.1.8) |
Mannonate dehydratase (EC 4.2.1.8) |
| CRON 2. | |||||||||||
| uxuQ |
|
*
Vibrio vulnificus CMCP6 Site: position = -169 score = 5.91725 sequence = AAATTGGTTAACCAATCT Site: position = -54 score = 5.63879 sequence = ACATTGGTAAACCAATTG Site: position = -203 score = 5.28074 sequence = AAATTGATTGACCAAAAT Gene: VV21067: predicted TRAP-type glucuronate transporter, small membrane subunit |
|
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -163 score = 6.02139 sequence = AAATTGGTTAACCAATTC Site: position = -197 score = 5.28074 sequence = AAATTGATTGACCAAAAT Site: position = -48 score = 5.63879 sequence = ACATTGGTAAACCAATTG Gene: VPA1703: predicted TRAP-type glucuronate transporter, small membrane subunit |
*
Vibrio shilonii AK1 Site: position = -168 score = 5.26327 sequence = GAATTGGTTGACCAATGT Gene: VSAK1_20679: predicted TRAP-type glucuronate transporter, small membrane subunit |
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*
Photobacterium profundum SS9 Site: position = -54 score = 5.21432 sequence = ACATTGGTTAACCAAACG Site: position = -167 score = 5.58338 sequence = ATATTGGTCAACCAATTC Site: position = -201 score = 5.05461 sequence = CAATTGGTTGACCTATAT Gene: PBPRB1878: predicted TRAP-type glucuronate transporter, small membrane subunit |
predicted TRAP-type glucuronate transporter, small membrane subunit |
| uxuM |
|
Gene: VV21068: predicted TRAP-type glucuronate transporter, large membrane subunit |
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Gene: VPA1704: predicted TRAP-type glucuronate transporter, large membrane subunit |
Gene: VSAK1_20674: predicted TRAP-type glucuronate transporter, large membrane subunit |
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Gene: PBPRB1879: predicted TRAP-type glucuronate transporter, large membrane subunit |
predicted TRAP-type glucuronate transporter, large membrane subunit |
| VSAK1_20669 |
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Gene: VSAK1_20669: hypothetical protein |
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hypothetical protein |
| uxuB |
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Gene: VV21069: D-mannonate oxidoreductase (EC 1.1.1.57) |
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Gene: VPA1705: D-mannonate oxidoreductase (EC 1.1.1.57) |
Gene: VSAK1_20664: D-mannonate oxidoreductase (EC 1.1.1.57) |
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Gene: PBPRB1880: D-mannonate oxidoreductase (EC 1.1.1.57) |
D-mannonate oxidoreductase (EC 1.1.1.57) |
| uxaC |
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Gene: VV21070: Uronate isomerase (EC 5.3.1.12) |
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Gene: VPA1706: Uronate isomerase (EC 5.3.1.12) |
Gene: VSAK1_20659: Uronate isomerase (EC 5.3.1.12) |
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*
Photobacterium profundum SS9 Site: position = -61 score = 4.42803 sequence = CCATAGGTTCACCAATCT Gene: PBPRB1515: Uronate isomerase (EC 5.3.1.12) |
Uronate isomerase (EC 5.3.1.12) |
| kdgK |
|
Gene: VV21071: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
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Gene: VPA1707: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
Gene: VSAK1_20654: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
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2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
| eda |
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Gene: VV21072: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
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Gene: VPA1708: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: VSAK1_20649: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
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2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
| VIBHAR_05661 |
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Gene: VSAK1_20644: hypothetical protein |
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Glutamate racemase (EC 5.1.1.3) |
| ygjV |
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Gene: VV21073: Conserved hypothetical protein |
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Gene: VPA1709: Conserved hypothetical protein |
Gene: VSAK1_20639: Conserved hypothetical protein |
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Gene: PBPRB1884: Conserved hypothetical protein |
Conserved hypothetical protein |
| uxaB |
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Gene: PBPRB1516: Altronate oxidoreductase (EC 1.1.1.58) |
Altronate oxidoreductase (EC 1.1.1.58) |
| uxaA |
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Gene: PBPRB1517: Altronate hydrolase (EC 4.2.1.7) |
Altronate hydrolase (EC 4.2.1.7) |
| CRON 3. | |||||||||||
| uxuP |
|
*
Vibrio vulnificus CMCP6 Site: position = -182 score = 5.05865 sequence = ATTTTGGTCAATCAATTT Site: position = -78 score = 4.57359 sequence = ACATTGGACAACCAATCC Site: position = -216 score = 5.8229 sequence = AGATTGGTTAACCAATTT Gene: VV21066: predicted TRAP-type glucuronate transporter, periplasmic subunit |
|
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -33 score = 5.08358 sequence = ATATTGGATAACCAATCC Site: position = -136 score = 5.05865 sequence = ATTTTGGTCAATCAATTT Site: position = -170 score = 5.97987 sequence = GAATTGGTTAACCAATTT Gene: VPA1702: predicted TRAP-type glucuronate transporter, periplasmic subunit |
*
Vibrio shilonii AK1 Site: position = -158 score = 5.40591 sequence = ACATTGGTCAACCAATTC Site: position = -66 score = 5.39759 sequence = TAATTGGTTAACCGAATT Gene: VSAK1_20684: predicted TRAP-type glucuronate transporter, periplasmic subunit |
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*2
Photobacterium profundum SS9 Gene: PBPRB1876: predicted TRAP-type glucuronate transporter, periplasmic subunit Site: position = -192 score = 4.57464 sequence = CGTTTGGTTAACCAATGT Site: position = -45 score = 5.1812 sequence = ATATAGGTCAACCAATTG Site: position = -79 score = 5.69831 sequence = GAATTGGTTGACCAATAT Gene: PBPRB1877: predicted TRAP-type glucuronate transporter, periplasmic subunit |
predicted TRAP-type glucuronate transporter, periplasmic subunit |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |