Regulog Lysine - Vibrionales
| Regulator type: | RNA regulatory element |
| Name: | Lysine |
| RFAM: | RF00168 |
| Regulation mode: | |
| Biological process: | Lysine biosynthesis |
| Effector: | Lysine |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Vibrionales
- By RNA motif - Lysine
- By effector - Lysine
- By pathway - Lysine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Vibrio cholerae O1 biovar eltor str. N16961 | 3 | 3 |
| Vibrio vulnificus CMCP6 | 2 | 2 |
| Vibrio harveyi ATCC BAA-1116 | 2 | 2 |
| Vibrio parahaemolyticus RIMD 2210633 | 2 | 2 |
| Vibrio shilonii AK1 | 2 | 2 |
| Vibrio splendidus LGP32 | 2 | 2 |
| Vibrio fischeri ES114 | 2 | 2 |
| Vibrio salmonicida LFI1238 | 1 | 1 |
| Vibrio angustum S14 | 3 | 3 |
| Photobacterium profundum SS9 | 3 | 3 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| lysC |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -289 score = 90.87 sequence = ATCTAGCAGAAGAGG... Gene: VC0391: Aspartokinase (EC 2.7.2.4) |
*
Vibrio vulnificus CMCP6 Site: position = -300 score = 80.36 sequence = TTTTTGCAGAAGAGG... Gene: VV1_1424: Aspartokinase (EC 2.7.2.4) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -301 score = 77.36 sequence = TATGCAGAAGAGGAG... Gene: VIBHAR_03711: Aspartokinase (EC 2.7.2.4) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -280 score = 79.62 sequence = TATGTAGAAGAGGAG... Gene: VP2715: Aspartokinase (EC 2.7.2.4) |
*
Vibrio shilonii AK1 Site: position = -275 score = 81.14 sequence = ACAGCGGAAGAGGAG... Gene: VSAK1_13886: Aspartokinase (EC 2.7.2.4) |
*
Vibrio splendidus LGP32 Site: position = -288 score = 87.17 sequence = ATCTAGCAGAAGAGG... Gene: VS_0316: Aspartokinase (EC 2.7.2.4) |
*
Vibrio fischeri ES114 Site: position = -241 score = 79.49 sequence = AATATAAAGAAGAGG... Gene: VF_0338: Aspartokinase (EC 2.7.2.4) |
|
*
Vibrio angustum S14 Site: position = -287 score = 78.71 sequence = TTAAAACGGAAGAGG... Gene: VAS14_19431: Aspartokinase (EC 2.7.2.4) |
*
Photobacterium profundum SS9 Site: position = -299 score = 77.65 sequence = AAAACGGAAGAGGAG... Gene: PBPRA3293: Aspartokinase (EC 2.7.2.4) |
Aspartokinase (EC 2.7.2.4) |
| CRON 2. | |||||||||||
| lysW |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -297 score = 119.65 sequence = TTCGCCGTAGAGGAG... Gene: VC1131: Predicted lysine transporter, NhaC family |
*
Vibrio vulnificus CMCP6 Site: position = -338 score = 129.92 sequence = TTATCGACGTAGAGG... Gene: VV1_2922: Predicted lysine transporter, NhaC family |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -289 score = 128.03 sequence = ATTGCCGTAGAGGTG... Gene: VIBHAR_01828: Predicted lysine transporter, NhaC family |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -293 score = 127.0 sequence = GTTGCCGTAGAGGCG... Gene: VP1134: Predicted lysine transporter, NhaC family |
*
Vibrio shilonii AK1 Site: position = -296 score = 117.86 sequence = TTTGATGTAGAGGCG... Gene: VSAK1_00180: Predicted lysine transporter, NhaC family |
*
Vibrio splendidus LGP32 Site: position = -282 score = 136.17 sequence = TACCGCACGTAGAGG... Gene: VS_2027: Predicted lysine transporter, NhaC family |
*
Vibrio fischeri ES114 Site: position = -266 score = 130.14 sequence = CTAAAAGGGTAGAGG... Gene: VF_1630: Predicted lysine transporter, NhaC family |
*
Vibrio salmonicida LFI1238 Site: position = -269 score = 124.97 sequence = CTAAACGGGTAGAGG... Gene: VSAL_I2144: Predicted lysine transporter, NhaC family |
*
Vibrio angustum S14 Site: position = -264 score = 111.68 sequence = TGTAAGGTAGAGGCG... Gene: VAS14_17901: Predicted lysine transporter, NhaC family |
*
Photobacterium profundum SS9 Site: position = -377 score = 135.26 sequence = CTAAGGGTAGAGGCG... Gene: PBPRA1083: Predicted lysine transporter, NhaC family |
Predicted lysine transporter, NhaC family |
| CRON 3. | |||||||||||
| lysW2 |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -243 score = 124.08 sequence = TCCTTTAAGTAGAGG... Gene: VCA0213: Predicted lysine transporter, NhaC family |
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*
Vibrio angustum S14 Site: position = -255 score = 126.66 sequence = CTTTGAGTAGAGGCG... Gene: VAS14_04198: Predicted lysine transporter, NhaC family |
*
Photobacterium profundum SS9 Site: position = -254 score = 117.59 sequence = TAATCAGTAGAGGTG... Gene: PBPRA2736: Predicted lysine transporter, NhaC family |
Predicted lysine transporter, NhaC family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |