Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PdxW - Vibrionales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis
Effector: Pyridoxal-5-phosphate
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Vibrio harveyi ATCC BAA-1116 1 1
Photobacterium profundum SS9
Vibrio angustum S14 1 1
Vibrio cholerae O1 biovar eltor str. N16961
Vibrio fischeri ES114
Vibrio parahaemolyticus RIMD 2210633 1 1
Vibrio salmonicida LFI1238
Vibrio shilonii AK1 1 1
Vibrio splendidus LGP32 1 1
Vibrio vulnificus CMCP6 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pdxO
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -114
score = 15.7558
sequence = AACTGGATCCAT-(11)-AACTGGCTCTCT-(2)-AAGCTACCAGTT

Gene: VIBHAR_05333: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Photobacterium profundum SS9
*
Vibrio angustum S14

Site:
position = -107
score = 14.1024
sequence = AACTGGATCCAT-(11)-AACTGGCTCTTA-(3)-ACAGTACCAAAG

Gene: VAS14_14934: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio fischeri ES114
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -84
score = 15.4289
sequence = AATTGGATCCAT-(11)-AAGTGGCTCTCT-(2)-AAGCTACCAGTT

Gene: VPA1238: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Vibrio salmonicida LFI1238
*
Vibrio shilonii AK1

Site:
position = -92
score = 12.8967
sequence = AACTGGATCCAC-(11)-ATTTGGACCTAA-(2)-AGAGTACCAAAT

Gene: VSAK1_18724: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
*
Vibrio splendidus LGP32

Site:
position = -90
score = 14.9281
sequence = AACTGGATCCAA-(11)-AAGTGGCTCTAT-(2)-AATAGACCAGTT

Gene: VS_II0336: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
*
Vibrio vulnificus CMCP6

Site:
position = -100
score = 11.7606
sequence = AATTGGATCTAA-(11)-AATTGGACCTTA-(2)-GCTAGACCAATT

Gene: VV20777: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD