Regulog PdxW - Vibrionales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Pyridoxine/pyridoxal homeostasis |
| Effector: | Pyridoxal-5-phosphate |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Vibrionales
- By TF family - GntR/MocR
- By effector - Pyridoxal-5-phosphate
- By pathway - Pyridoxine/pyridoxal homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Vibrio harveyi ATCC BAA-1116 | 1 | 1 |
| Photobacterium profundum SS9 | ||
| Vibrio angustum S14 | 1 | 1 |
| Vibrio cholerae O1 biovar eltor str. N16961 | ||
| Vibrio fischeri ES114 | ||
| Vibrio parahaemolyticus RIMD 2210633 | 1 | 1 |
| Vibrio salmonicida LFI1238 | ||
| Vibrio shilonii AK1 | 1 | 1 |
| Vibrio splendidus LGP32 | 1 | 1 |
| Vibrio vulnificus CMCP6 | 1 | 1 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| pdxO |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -114 score = 15.7558 sequence = AACTGGATCCAT-(11)-AACTGGCTCTCT-(2)-AAGCTACCAGTT Gene: VIBHAR_05333: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
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Vibrio angustum S14 Site: position = -107 score = 14.1024 sequence = AACTGGATCCAT-(11)-AACTGGCTCTTA-(3)-ACAGTACCAAAG Gene: VAS14_14934: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
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Vibrio parahaemolyticus RIMD 2210633 Site: position = -84 score = 15.4289 sequence = AATTGGATCCAT-(11)-AAGTGGCTCTCT-(2)-AAGCTACCAGTT Gene: VPA1238: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
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Vibrio shilonii AK1 Site: position = -92 score = 12.8967 sequence = AACTGGATCCAC-(11)-ATTTGGACCTAA-(2)-AGAGTACCAAAT Gene: VSAK1_18724: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
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Vibrio splendidus LGP32 Site: position = -90 score = 14.9281 sequence = AACTGGATCCAA-(11)-AAGTGGCTCTAT-(2)-AATAGACCAGTT Gene: VS_II0336: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
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Vibrio vulnificus CMCP6 Site: position = -100 score = 11.7606 sequence = AATTGGATCTAA-(11)-AATTGGACCTTA-(2)-GCTAGACCAATT Gene: VV20777: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |