Regulog PdxW - Vibrionales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Pyridoxine/pyridoxal homeostasis
Effector:	Pyridoxal-5-phosphate
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 6 sites [see more]

Member of regulog collections

Statistics of regulated genes
Genome	Genes	Operons
Vibrio harveyi ATCC BAA-1116	1	1
Photobacterium profundum SS9
Vibrio angustum S14	1	1
Vibrio cholerae O1 biovar eltor str. N16961
Vibrio fischeri ES114
Vibrio parahaemolyticus RIMD 2210633	1	1
Vibrio salmonicida LFI1238
Vibrio shilonii AK1	1	1
Vibrio splendidus LGP32	1	1
Vibrio vulnificus CMCP6	1	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
pdxO	* Vibrio harveyi ATCC BAA-1116 Site: position = -114 score = 15.7558 sequence = AACTGGATCCAT-(11)-AACTGGCTCTCT-(2)-AAGCTACCAGTT Gene: VIBHAR_05333: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding	Photobacterium profundum SS9	* Vibrio angustum S14 Site: position = -107 score = 14.1024 sequence = AACTGGATCCAT-(11)-AACTGGCTCTTA-(3)-ACAGTACCAAAG Gene: VAS14_14934: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio fischeri ES114	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -84 score = 15.4289 sequence = AATTGGATCCAT-(11)-AAGTGGCTCTCT-(2)-AAGCTACCAGTT Gene: VPA1238: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding	Vibrio salmonicida LFI1238	* Vibrio shilonii AK1 Site: position = -92 score = 12.8967 sequence = AACTGGATCCAC-(11)-ATTTGGACCTAA-(2)-AGAGTACCAAAT Gene: VSAK1_18724: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding	* Vibrio splendidus LGP32 Site: position = -90 score = 14.9281 sequence = AACTGGATCCAA-(11)-AAGTGGCTCTAT-(2)-AATAGACCAGTT Gene: VS_II0336: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding	* Vibrio vulnificus CMCP6 Site: position = -100 score = 11.7606 sequence = AATTGGATCTAA-(11)-AATTGGACCTTA-(2)-GCTAGACCAATT Gene: VV20777: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding	Pyridoxamine 5'-phosphate oxidase-related, FMN-binding

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --