Regulog NtrC - Vibrionales
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Vibrionales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Genome | Genes | Operons |
|---|---|---|
| Vibrio cholerae O1 biovar eltor str. N16961 | 4 | 3 |
| Vibrio vulnificus CMCP6 | 5 | 3 |
| Vibrio harveyi ATCC BAA-1116 | 5 | 3 |
| Vibrio parahaemolyticus RIMD 2210633 | 6 | 4 |
| Vibrio shilonii AK1 | 4 | 3 |
| Vibrio splendidus LGP32 | 6 | 4 |
| Vibrio fischeri ES114 | 5 | 3 |
| Vibrio salmonicida LFI1238 | ||
| Vibrio angustum S14 | 5 | 3 |
| Photobacterium profundum SS9 | 5 | 3 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| amtB2 |
|
Gene: VV1_2598: Ammonium transporter |
|
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -182 score = 5.3002 sequence = CGCATTATATTGGTGCA Gene: VP1523: Ammonium transporter |
*
Vibrio shilonii AK1 Site: position = -238 score = 5.18672 sequence = TTCACTATATTGGTGCG Gene: VSAK1_11520: Ammonium transporter |
*
Vibrio splendidus LGP32 Site: position = -138 score = 5.45835 sequence = CGCATCAATATGGTGCA Gene: VS_1481: Ammonium transporter |
|
|
|
Gene: PBPRB0379: Ammonium transporter |
Ammonium transporter |
| CRON 2. | |||||||||||
| glnK |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -108 score = 5.39495 sequence = TGCACCGAATCGGTGCA Gene: VC0606: Nitrogen regulatory protein P-II |
*
Vibrio vulnificus CMCP6 Site: position = -114 score = 5.82411 sequence = CGCACCATTATGGTGCG Gene: VV1_1658: Nitrogen regulatory protein P-II |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -137 score = 5.51814 sequence = CGCACCGATATGGTGCG Gene: VIBHAR_03437: Nitrogen regulatory protein P-II |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -137 score = 5.51814 sequence = CGCACCATATCGGTGCG Gene: VP2493: Nitrogen regulatory protein P-II |
|
*
Vibrio splendidus LGP32 Site: position = -143 score = 5.78427 sequence = CGCACCATATTGGTGCG Gene: VS_2520: Nitrogen regulatory protein P-II |
*
Vibrio fischeri ES114 Site: position = -136 score = 5.55937 sequence = TGCACTATATTAGTGCG Gene: VF_2153: Nitrogen regulatory protein P-II |
Gene: VSAL_I2590: Nitrogen regulatory protein P-II |
*
Vibrio angustum S14 Site: position = -142 score = 5.36038 sequence = TGCACTGTGATGGTGCA Gene: VAS14_20021: Nitrogen regulatory protein P-II |
*
Photobacterium profundum SS9 Site: position = -140 score = 5.45835 sequence = TGCATCATATTGGTGCG Gene: PBPRA3186: Nitrogen regulatory protein P-II |
Nitrogen regulatory protein P-II |
| amtB |
|
Gene: VV1_1659: Ammonium transporter |
Gene: VIBHAR_03436: Ammonium transporter |
Gene: VP2492: Ammonium transporter |
|
Gene: VS_2519: Ammonium transporter |
Gene: VF_2152: Ammonium transporter |
Gene: VSAL_I2589: Ammonium transporter |
Gene: VAS14_20026: Ammonium transporter |
Gene: PBPRA3185: Ammonium transporter |
Ammonium transporter |
| CRON 3. | |||||||||||
| glnA |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -222 score = 5.53511 sequence = CGCACCATGATAGTGCA Gene: VC2746: Glutamine synthetase type I (EC 6.3.1.2) |
*
Vibrio vulnificus CMCP6 Site: position = -223 score = 5.4756 sequence = CGCACCATTAAGGTGCA Gene: VV1_0889: Glutamine synthetase type I (EC 6.3.1.2) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -231 score = 5.58261 sequence = TGCACCATTACAGTGCA Gene: VIBHAR_00588: Glutamine synthetase type I (EC 6.3.1.2) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -229 score = 5.27716 sequence = CGCACCACTTTAGTGCA Gene: VP0121: Glutamine synthetase type I (EC 6.3.1.2) |
*
Vibrio shilonii AK1 Site: position = -225 score = 5.40885 sequence = TGCACCATAAAAGTGCA Gene: VSAK1_12517: Glutamine synthetase type I (EC 6.3.1.2) |
*
Vibrio splendidus LGP32 Site: position = -219 score = 5.22452 sequence = TGCACCAATACCGTGCA Gene: VS_0121: Glutamine synthetase type I (EC 6.3.1.2) |
*
Vibrio fischeri ES114 Site: position = -177 score = 5.58667 sequence = TGCACCAAGATAGTGCA Gene: VF_0098: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: VSAL_I2940: Glutamine synthetase type I (EC 6.3.1.2) |
*
Vibrio angustum S14 Site: position = -202 score = 5.10242 sequence = TGCACCAAAGCAGTGCA Gene: VAS14_22994: Glutamine synthetase type I (EC 6.3.1.2) |
*
Photobacterium profundum SS9 Site: position = -199 score = 5.13516 sequence = CGCACCATAATAGGGCG Gene: PBPRA3492: Glutamine synthetase type I (EC 6.3.1.2) |
Glutamine synthetase type I (EC 6.3.1.2) |
| CRON 4. | |||||||||||
| ntrB |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -50 score = 5.51338 sequence = TGCACCAATTTTGTGCA Gene: VC2748: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
*
Vibrio vulnificus CMCP6 Site: position = -46 score = 5.54683 sequence = TGCACCAACTTAGTGCA Gene: VV1_0891: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -85 score = 5.80891 sequence = TGCACCAATATAGTGCA Gene: VIBHAR_00585: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -49 score = 5.59306 sequence = TGCACCATTATTGTGCA Gene: VP0119: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
*
Vibrio shilonii AK1 Site: position = -123 score = 5.80891 sequence = TGCACCATTTTAGTGCA Gene: VSAK1_12507: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
*
Vibrio splendidus LGP32 Site: position = -48 score = 5.83582 sequence = CGCACCAATTTGGTGCA Gene: VS_0119: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
*
Vibrio fischeri ES114 Site: position = -37 score = 5.78465 sequence = TGCACCATGATGGTGCA Gene: VF_0096: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
|
*
Vibrio angustum S14 Site: position = -70 score = 5.83582 sequence = TGCACCAATTTGGTGCG Gene: VAS14_22979: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
*
Photobacterium profundum SS9 Site: position = -66 score = 5.87566 sequence = TGCACCAATATGGTGCG Gene: PBPRA3494: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
| ntrC |
Gene: VC2749: Nitrogen regulation protein NR(I), Fis family |
Gene: VV1_0892: Nitrogen regulation protein NR(I), Fis family |
Gene: VIBHAR_00584: Nitrogen regulation protein NR(I), Fis family |
Gene: VP0118: Nitrogen regulation protein NR(I), Fis family |
Gene: VSAK1_12502: Nitrogen regulation protein NR(I), Fis family |
Gene: VS_0118: Nitrogen regulation protein NR(I), Fis family |
Gene: VF_0095: Nitrogen regulation protein NR(I), Fis family |
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Gene: VAS14_22974: Nitrogen regulation protein NR(I), Fis family |
Gene: PBPRA3495: Nitrogen regulation protein NR(I), Fis family |
Nitrogen regulation protein NR(I), Fis family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |