Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Vibrio harveyi ATCC BAA-1116

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 9 13
TF BglR Beta-glucoside Beta-glucosides utilization 2 2
TF BirA Biotin Biotin biosynthesis 2 2
TF CelR Cellobiose-6-phosphate Cellobiose utilization 2 2
TF CueR Copper ion, (Cu+) Copper resistance 4 3
TF EbgR Beta-galactosides Galactosides utilization 3 1
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 7 9
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 8 9
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Fructose utilization 2 6
TF Fur Iron ion, (Fe2+) Iron homeostasis 56 59
TF GalR Galactose Galactose utilization 4 3
TF GntR Gluconate Gluconate utilization 3 5
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 24 21
TF HutC cis-Urocanic acid Histidine utilization 2 2
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 3 4
TF LexA DNA damage SOS response 21 22
TF LiuR Branched-chain amino acid degradation 4 6
TF MetJ S-adenosylmethionine Methionine metabolism; Methionine biosynthesis 14 23
TF MetR Homocysteine Methionine biosynthesis 6 7
TF NagC N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 24 20
TF NarP Nitrite; Nitrate Nitrate and nitrite respiration 18 12
TF NorR2 Nitric oxide Nitrosative stress response 2 3
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 4
TF NrtR Adenosine diphosphate ribose NAD biosynthesis 2 2
TF NsrR Nitric oxide Nitrosative stress response 4 6
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 3 3
TF PdhR Pyruvate Pyruvate metabolism 1 2
TF PdxW Pyridoxal-5-phosphate Pyridoxine/pyridoxal homeostasis 1 1
TF PhnR Phosphonate utilization; 2-aminoethylphosphonate utilization 4 5
TF PhrR Heat shock; Adenosylcobalamin Light-dependent DNA repair 3 3
TF PhsR Thiosulfate Thiosulfate reduction 3 2
TF PrpR 2-methylcitrate Methylcitrate utilization 1 4
TF PsrA Oleate Fatty acid degradation 7 7
TF PurR Hypoxanthine; Guanine Purine metabolism 18 17
TF RbsR Ribose Ribose utilization 1 2
TF SdaR D-glycerate Glycerate utilization 1 1
TF SoxR Paraquat Superoxide stress response 5 4
TF TreR Trehalose-6-phosphate Trehalose utilization 1 2
TF TrpR Tryptophan Tryptophan biosynthesis 3 2
TF TyrR Tyrosine; Phenylalanine Aromatic amino acid metabolism 9 8
TF VCA0673 3 4
TF VEA_000881 Metabolite transport 1 1
TF VIBHAR_07005 Multidrug resistance; Multidrug efflux 1 1
TF YdcR 2 2
TF ZntR Zinc ion, (Zn2+) Zinc resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 7 6
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 2 1
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 2 1
RNA GEMM_RNA_motif Cyclic diguanylate Second messenger response 3 1
RNA Glycine Glycine Glycine metabolism 1 2
RNA His_leader Histidine biosynthesis 1 1
RNA Leu_leader Branched-chain amino acid biosynthesis 1 1
RNA Lysine Lysine Lysine biosynthesis 2 2
RNA MOCO_RNA_motif Molybdenum Molybdopterin biosynthesis; Molybdenum homeostasis 1 1
RNA Purine Guanine; Adenine Purine metabolism 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 3 3
RNA Thr_leader Threonine biosynthesis 1 1
RNA Trp_leader Tryptophan biosynthesis 1 1
RNA mini-ykkC Multidrug resistance 1 1
RNA yybP-ykoY 2 2
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise