Regulon of PhrR in Vibrio harveyi ATCC BAA-1116

Properties
Regulator type:	Transcription factor
TF locus tag:	VIBHAR_05121
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Light-dependent DNA repair
Effector:	Heat shock; Adenosylcobalamin
Regulog:	PhrR - Vibrionales
Statistics of regulated genes:
- Genes	12
- Operons	2
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 16 sites [see more]

Member of regulog collections

By taxonomy - Vibrionales
By trascription factor - PhrR
By TF family - MerR
By effector - Heat shock
By effector - Adenosylcobalamin
By pathway - Light-dependent DNA repair

Regulated operons
	Locus Tag	Name	Function
Position: -81 Score: 6 Sequence: TGTACATTTTATTTTCTTGTACA Position: -35 Score: 6.1 Sequence: TATACAACAAAACATTTTGTATA Locus tag: VIBHAR_05120 Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA Locus tag: VIBHAR_05121 Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase Locus tag: VIBHAR_05122 Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3) Locus tag: VIBHAR_05123 Name: ykuD Funciton: L,D-transpeptidase catalytic domain
	VIBHAR_05120	COG3272	COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
	VIBHAR_05121	phrR	Transcriptional regulator, MerR family, associated with photolyase
	VIBHAR_05122	phr	Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
	VIBHAR_05123	ykuD	L,D-transpeptidase catalytic domain
Position: -51 Score: 6.5 Sequence: TGTACATATAATATTTTTGTACA Locus tag: VIBHAR_01814 Name: PF07366 Funciton: Protein of unknown function DUF1486 Locus tag: VIBHAR_01815 Name: PF00106 Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) Locus tag: VIBHAR_01816 Name: PF01593 Funciton: Flavin containing amine oxidoreductase Locus tag: VIBHAR_01817 Name: PF07103 Funciton: Protein of unknown function DUF1365 Locus tag: VIBHAR_01818 Name: PF02353 Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase Locus tag: VIBHAR_01819 Name: PF11086 Funciton: Protein of unknown function DUF2878 Locus tag: VIBHAR_01820 Name: FIG026291 Funciton: FIG026291: Hypothetical periplasmic protein Locus tag: VIBHAR_01821 Name: FIG002577 Funciton: FIG002577: Putative lipoprotein precursor
	VIBHAR_01814	PF07366	Protein of unknown function DUF1486
	VIBHAR_01815	PF00106	Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
	VIBHAR_01816	PF01593	Flavin containing amine oxidoreductase
	VIBHAR_01817	PF07103	Protein of unknown function DUF1365
	VIBHAR_01818	PF02353	S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
	VIBHAR_01819	PF11086	Protein of unknown function DUF2878
	VIBHAR_01820	FIG026291	FIG026291: Hypothetical periplasmic protein
	VIBHAR_01821	FIG002577	FIG002577: Putative lipoprotein precursor

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD