Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of PhrR in Vibrio cholerae O1 biovar eltor str. N16961

Properties
Regulator type: Transcription factor
TF locus tag: VCA0056
Regulator family: MerR
Regulation mode: repressor
Biological process: Light-dependent DNA repair
Effector: Heat shock; Adenosylcobalamin
Regulog: PhrR - Vibrionales
Statistics of regulated genes:
- Genes 12
- Operons 2
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 16 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -76
Score: 6.7
Sequence: TGTACAAAAAAAATATTTGTACA
Position: -28
Score: 5.8
Sequence: TGTACAGAAATTTTCATTGTATA
Locus tag: VCA0055
Name: COG3272
Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: VCA0056
Name: phrR
Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: VCA0057
Name: phr
Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: VCA0058
Name: ykuD
Funciton: L,D-transpeptidase catalytic domain
COG3272
COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
phrR
Transcriptional regulator, MerR family, associated with photolyase
phr
Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
ykuD
L,D-transpeptidase catalytic domain

Position: -32
Score: 5.6
Sequence: TATACGAATCTTAAATTTGTATA
Locus tag: VC1118
Name: PF07366
Funciton: Protein of unknown function DUF1486
Locus tag: VC1119
Name: PF00106
Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Locus tag: VC1120
Name: PF01593
Funciton: Flavin containing amine oxidoreductase
Locus tag: VC1121
Name: PF07103
Funciton: Protein of unknown function DUF1365
Locus tag: VC1122
Name: PF02353
Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
Locus tag: VC1123
Name: PF11086
Funciton: Protein of unknown function DUF2878
Locus tag: VC1124
Name: FIG026291
Funciton: FIG026291: Hypothetical periplasmic protein
Locus tag: VC1125
Name: FIG002577
Funciton: FIG002577: Putative lipoprotein precursor
PF07366
Protein of unknown function DUF1486
PF00106
Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
PF01593
Flavin containing amine oxidoreductase
PF07103
Protein of unknown function DUF1365
PF02353
S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
PF11086
Protein of unknown function DUF2878
FIG026291
FIG026291: Hypothetical periplasmic protein
FIG002577
FIG002577: Putative lipoprotein precursor
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