Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NagC in Vibrio fischeri ES114

Properties
Regulator type: Transcription factor
TF locus tag: VF_0806
Regulator family: ROK
Regulation mode: repressor (activator)
Biological process: N-acetylglucosamine utilization
Effector: N-acetylglucosamine-6-phosphate
Regulog: NagC - Vibrionales
Statistics of regulated genes:
- Genes 25
- Operons 20
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 199 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -128
Score: 4.7
Sequence: TATATTTTTCAATAAAATAAATT
Locus tag: VF_2510
Name: null
Funciton: Putative BglB-family transcriptional antiterminator
VF_2510
Putative BglB-family transcriptional antiterminator
Position: -136
Score: 4.6
Sequence: CTTGTTTCGTTACATGAATTAAT
Locus tag: VF_0896
Name: tfoX1
Funciton: DNA transformation protein TfoX1 (Sxy)
VF_0896
tfoX1
DNA transformation protein TfoX1 (Sxy)
Position: -132
Score: 5.2
Sequence: CTTTTTTTTCATTAAAAATATAA
Locus tag: VF_0818
Name: gltA
Funciton: Citrate synthase (si) (EC 2.3.3.1)
VF_0818
gltA
Citrate synthase (si) (EC 2.3.3.1)
Position: -283
Score: 4.8
Sequence: GTTATTTTGTGATGTAAACCAAG
Position: -143
Score: 4.8
Sequence: TTAATTTTGTGAAGCGAATTAAT
Locus tag: VF_1795
Name: ompC
Funciton: Predicted OmpC-like chitoporin
VF_1795
ompC
Predicted OmpC-like chitoporin
Position: -131
Score: 5
Sequence: CTTGATTTTTAACATGAATTAAG
Locus tag: VF_2138
Name: chiS
Funciton: Chitin catabolic cascade sensor histidine kinase ChiS
VF_2138
chiS
Chitin catabolic cascade sensor histidine kinase ChiS
Position: -159
Score: 4.8
Sequence: GTTAATTTACGCCTCGAATTAAT
Locus tag: VF_A0438
Name: nagE2
Funciton: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
VF_A0438
nagE2
PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
Position: -128
Score: 4.5
Sequence: TTTAATTTGCGGGGCGAAATTAA
Locus tag: VF_0808
Name: nagE2
Funciton: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
VF_0808
nagE2
PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
Position: -123
Score: 5
Sequence: AATAATTTATACCGCAAAATATA
Position: -33
Score: 4
Sequence: TGTAATTCCAGATTCGAAATTAA
Locus tag: VF_A1010
Name: hex
Funciton: Beta-hexosaminidase (EC 3.2.1.52)
VF_A1010
hex
Beta-hexosaminidase (EC 3.2.1.52)
Position: -318
Score: 5
Sequence: CTATTTTTGTTGCTAAAAATAAC
Locus tag: VF_1732
Name: ptsG
Funciton: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
VF_1732
ptsG
PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
Position: -136
Score: 4.6
Sequence: ATTGATTTGGAGCAAAAAATAAA
Locus tag: VF_2076
Name: pyrG
Funciton: CTP synthase (EC 6.3.4.2)
Locus tag: VF_2075
Name: eno
Funciton: Enolase (EC 4.2.1.11)
VF_2076
pyrG
CTP synthase (EC 6.3.4.2)
VF_2075
eno
Enolase (EC 4.2.1.11)
Position: -273
Score: 4.3
Sequence: TTTTATTTAAGATTTAATTCAAA
Locus tag: VF_2161
Name: mcp
Funciton: N-acetylglucosamine regulated methyl-accepting chemotaxis protein
VF_2161
mcp
N-acetylglucosamine regulated methyl-accepting chemotaxis protein
Position: -210
Score: 4.9
Sequence: TTTATTTCTTTATTTACAATAAG
Locus tag: VF_A0143
Name: cbp
Funciton: Chitin binding protein
VF_A0143
cbp
Chitin binding protein
Position: -104
Score: 5
Sequence: GTTAATTTTTACGTTAAAATAAC
Locus tag: VF_1573
Name: tfoX
Funciton: DNA transformation protein TfoX
VF_1573
tfoX
DNA transformation protein TfoX
Position: -39
Score: 4.4
Sequence: CTTAATTTCGTTTTTAAATTATC
Locus tag: VF_1390
Name: chi
Funciton: Chitinase (EC 3.2.1.14)
VF_1390
chi
Chitinase (EC 3.2.1.14)
Position: -218
Score: 5.5
Sequence: TTTATTTTTAGGTGTAAAATAAT
Locus tag: VF_1894
Name: ptsH
Funciton: Phosphocarrier protein of PTS system
Locus tag: VF_1895
Name: ptsI
Funciton: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
Locus tag: VF_1897
Name: crr
Funciton: PTS system, glucose-specific IIA component (EC 2.7.1.69)
VF_1894
ptsH
Phosphocarrier protein of PTS system
VF_1895
ptsI
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
VF_1897
crr
PTS system, glucose-specific IIA component (EC 2.7.1.69)
Position: -237
Score: 5.2
Sequence: TATTTTTTTTATTGGAAATTAAG
Locus tag: VF_1889
Name: chiP
Funciton: Outer membrane chitoporin
VF_1889
chiP
Outer membrane chitoporin
Position: -233
Score: 4.6
Sequence: CTAAATTCAAAGCACAAATAAAC
Position: -208
Score: 4.6
Sequence: CTATTTTTATAAAGCAATAAAAA
Locus tag: VF_1598
Name: chiA
Funciton: Chitinase (EC 3.2.1.14)
VF_1598
chiA
Chitinase (EC 3.2.1.14)
Position: -154
Score: 4.3
Sequence: GTAAATTTGTGATGAAAAGATAA
Position: -126
Score: 4.5
Sequence: ATGAATTTTTATCTTGAAAAAAG
Locus tag: VF_0442
Name: pgk
Funciton: Phosphoglycerate kinase (EC 2.7.2.3)
Locus tag: VF_0443
Name: fbaA
Funciton: Fructose-bisphosphate aldolase class II (EC 4.1.2.13)
VF_0442
pgk
Phosphoglycerate kinase (EC 2.7.2.3)
VF_0443
fbaA
Fructose-bisphosphate aldolase class II (EC 4.1.2.13)
Position: -65
Score: 5.4
Sequence: CTTATTTTATAATGCGAATTAAT
Locus tag: VF_2357
Name: nagB
Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
VF_2357
nagB
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Position: -40
Score: 4.7
Sequence: TTTTTTTCGTACTCTAAATTATA
Locus tag: VF_0807
Name: nagA
Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Locus tag: VF_0806
Name: nagC
Funciton: N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
VF_0807
nagA
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
VF_0806
nagC
N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
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