Regulog S15 - Vibrionales
| Regulator type: | RNA regulatory element |
| Name: | S15 |
| RFAM: | RF00114 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Vibrionales
- By RNA motif - S15
- By pathway - Ribosome biogenesis
| Genome | Genes | Operons |
|---|---|---|
| Vibrio cholerae O1 biovar eltor str. N16961 | 1 | 1 |
| Vibrio vulnificus CMCP6 | 1 | 1 |
| Vibrio harveyi ATCC BAA-1116 | ||
| Vibrio parahaemolyticus RIMD 2210633 | 1 | 1 |
| Vibrio shilonii AK1 | 1 | 1 |
| Vibrio splendidus LGP32 | 1 | 1 |
| Vibrio fischeri ES114 | 1 | 1 |
| Vibrio salmonicida LFI1238 | 1 | 1 |
| Vibrio angustum S14 | 1 | 1 |
| Photobacterium profundum SS9 | 1 | 1 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| rpsO |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -63 score = 94.09 sequence = GTGTCGGCTGAATCA... Gene: VC0646: SSU ribosomal protein S15p (S13e) |
*
Vibrio vulnificus CMCP6 Site: position = -62 score = 96.8 sequence = GTGTCGGCTGAATCA... Gene: VV1_1701: SSU ribosomal protein S15p (S13e) |
|
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -64 score = 91.51 sequence = TCGTGTCGGCTGAAT... Gene: VP2453: SSU ribosomal protein S15p (S13e) |
*
Vibrio shilonii AK1 Site: position = -65 score = 91.61 sequence = GCGTAGCGGCTGAAT... Gene: VSAK1_10978: SSU ribosomal protein S15p (S13e) |
*
Vibrio splendidus LGP32 Site: position = -64 score = 91.39 sequence = GCGTAGCGGCTGAAT... Gene: VS_2479: SSU ribosomal protein S15p (S13e) |
*
Vibrio fischeri ES114 Site: position = -62 score = 92.93 sequence = GTAGTGGCTGAATCA... Gene: VF_0489: SSU ribosomal protein S15p (S13e) |
*
Vibrio salmonicida LFI1238 Site: position = -62 score = 92.38 sequence = GTAGTGGCTGAATCA... Gene: VSAL_I0601: SSU ribosomal protein S15p (S13e) |
*
Vibrio angustum S14 Site: position = -63 score = 87.11 sequence = GGGTGTCGGCTGAAT... Gene: VAS14_07319: SSU ribosomal protein S15p (S13e) |
*
Photobacterium profundum SS9 Site: position = -60 score = 81.21 sequence = GTGTCGGCTGAATCA... Gene: PBPRA0615: SSU ribosomal protein S15p (S13e) |
SSU ribosomal protein S15p (S13e) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |