Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog S15 - Vibrionales

Properties
Regulator type: RNA regulatory element
Name: S15
RFAM: RF00114
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Vibrio cholerae O1 biovar eltor str. N16961 1 1
Vibrio vulnificus CMCP6 1 1
Vibrio harveyi ATCC BAA-1116
Vibrio parahaemolyticus RIMD 2210633 1 1
Vibrio shilonii AK1 1 1
Vibrio splendidus LGP32 1 1
Vibrio fischeri ES114 1 1
Vibrio salmonicida LFI1238 1 1
Vibrio angustum S14 1 1
Photobacterium profundum SS9 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rpsO
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -63
score = 94.09
sequence = GTGTCGGCTGAATCA...

Gene: VC0646: SSU ribosomal protein S15p (S13e)
*
Vibrio vulnificus CMCP6

Site:
position = -62
score = 96.8
sequence = GTGTCGGCTGAATCA...

Gene: VV1_1701: SSU ribosomal protein S15p (S13e)
 
Vibrio harveyi ATCC BAA-1116
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -64
score = 91.51
sequence = TCGTGTCGGCTGAAT...

Gene: VP2453: SSU ribosomal protein S15p (S13e)
*
Vibrio shilonii AK1

Site:
position = -65
score = 91.61
sequence = GCGTAGCGGCTGAAT...

Gene: VSAK1_10978: SSU ribosomal protein S15p (S13e)
*
Vibrio splendidus LGP32

Site:
position = -64
score = 91.39
sequence = GCGTAGCGGCTGAAT...

Gene: VS_2479: SSU ribosomal protein S15p (S13e)
*
Vibrio fischeri ES114

Site:
position = -62
score = 92.93
sequence = GTAGTGGCTGAATCA...

Gene: VF_0489: SSU ribosomal protein S15p (S13e)
*
Vibrio salmonicida LFI1238

Site:
position = -62
score = 92.38
sequence = GTAGTGGCTGAATCA...

Gene: VSAL_I0601: SSU ribosomal protein S15p (S13e)
*
Vibrio angustum S14

Site:
position = -63
score = 87.11
sequence = GGGTGTCGGCTGAAT...

Gene: VAS14_07319: SSU ribosomal protein S15p (S13e)
*
Photobacterium profundum SS9

Site:
position = -60
score = 81.21
sequence = GTGTCGGCTGAATCA...

Gene: PBPRA0615: SSU ribosomal protein S15p (S13e)
SSU ribosomal protein S15p (S13e)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD