Regulog Trp_leader - Vibrionales
| Regulator type: | RNA regulatory element |
| Name: | Trp_leader |
| RFAM: | RF00513 |
| Regulation mode: | |
| Biological process: | Tryptophan biosynthesis |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Vibrionales
- By RNA motif - Trp_leader
- By pathway - Tryptophan biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Vibrio cholerae O1 biovar eltor str. N16961 | 6 | 1 |
| Vibrio vulnificus CMCP6 | 6 | 1 |
| Vibrio harveyi ATCC BAA-1116 | 6 | 1 |
| Vibrio parahaemolyticus RIMD 2210633 | 6 | 1 |
| Vibrio shilonii AK1 | 6 | 1 |
| Vibrio splendidus LGP32 | 6 | 1 |
| Vibrio fischeri ES114 | 7 | 1 |
| Vibrio salmonicida LFI1238 | 6 | 1 |
| Vibrio angustum S14 | 7 | 1 |
| Photobacterium profundum SS9 | 7 | 1 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| trpE |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -188 score = 77.08 sequence = ACTGGCTTGGTGGCG... Gene: VC1174: Anthranilate synthase, aminase component (EC 4.1.3.27) |
*
Vibrio vulnificus CMCP6 Site: position = -230 score = 74.71 sequence = TCGCTTGGTGGCGCA... Gene: VV1_3064: Anthranilate synthase, aminase component (EC 4.1.3.27) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -228 score = 67.32 sequence = TTGCTTGGTGGCGCA... Gene: VIBHAR_02758: Anthranilate synthase, aminase component (EC 4.1.3.27) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -228 score = 74.22 sequence = TTGCTTGGTGGCGCA... Gene: VP1956: Anthranilate synthase, aminase component (EC 4.1.3.27) |
*
Vibrio shilonii AK1 Site: position = -230 score = 45.79 sequence = ACAAGGTTGGTGGCG... Gene: VSAK1_01022: Anthranilate synthase, aminase component (EC 4.1.3.27) |
*
Vibrio splendidus LGP32 Site: position = -191 score = 67.4 sequence = TTAATTGGTGGCGCA... Gene: VS_1966: Anthranilate synthase, aminase component (EC 4.1.3.27) |
*2
Vibrio fischeri ES114 Site: position = -226 score = 23.11 sequence = TCACGATGGTGGCAC... Gene: VF_2602: Anthranilate synthase, aminase component (EC 4.1.3.27) Gene: VF_1033: Anthranilate synthase, aminase component (EC 4.1.3.27) |
*
Vibrio salmonicida LFI1238 Site: position = -213 score = 35.05 sequence = TCAACGTTGGTGGCA... Gene: VSAL_I1154: Anthranilate synthase, aminase component (EC 4.1.3.27) |
Gene: VAS14_18369: Anthranilate synthase, aminase component (EC 4.1.3.27) |
Gene: PBPRA2486: Anthranilate synthase, aminase component (EC 4.1.3.27) |
Anthranilate synthase, aminase component (EC 4.1.3.27) |
| trpG |
Gene: VC1173: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) |
Gene: VV1_3065: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) |
Gene: VIBHAR_02759: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) |
Gene: VP1957: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) |
Gene: VSAK1_01017: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) |
Gene: VS_1967: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) |
Gene: VF_1032: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) |
Gene: VSAL_I1153: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) |
Gene: VAS14_18364: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) |
Gene: PBPRA2487: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) |
Anthranilate synthase, amidotransferase component (EC 4.1.3.27) |
| trpD |
Gene: VC1172: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: VV1_3066: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: VIBHAR_02760: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: VP1958: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: VSAK1_01012: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: VS_1968: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: VF_1031: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: VSAL_I1152: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: VAS14_18359: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: PBPRA2488: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
| trpC |
Gene: VC1171: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: VV1_3067: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: VIBHAR_02761: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: VP1959: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: VSAK1_01007: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: VS_1969: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: VF_1029: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: VSAL_I1151: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: VAS14_18354: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: PBPRA2489: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
| trpB |
Gene: VC1170: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: VV1_3068: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: VIBHAR_02762: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: VP1960: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: VSAK1_01002: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: VS_1970: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: VF_1028: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: VSAL_I1150: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: VAS14_18349: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: PBPRA2490: Tryptophan synthase beta chain (EC 4.2.1.20) |
Tryptophan synthase beta chain (EC 4.2.1.20) |
| trpA |
Gene: VC1169: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: VV1_3069: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: VIBHAR_02763: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: VP1961: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: VSAK1_00997: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: VS_1971: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: VF_1027: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: VSAL_I1149: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: VAS14_18344: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: PBPRA2491: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Tryptophan synthase alpha chain (EC 4.2.1.20) |
| aroF2 |
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*
Vibrio angustum S14 Site: position = -174 score = 55.5 sequence = CAATAATTGGTGGTG... Gene: VAS14_18374: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54) |
*
Photobacterium profundum SS9 Site: position = -174 score = 42.48 sequence = TCTCATGGTGGTGGC... Gene: PBPRA2485: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54) |
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |