Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog Trp_leader - Vibrionales

Properties
Regulator type: RNA regulatory element
Name: Trp_leader
RFAM: RF00513
Regulation mode:
Biological process: Tryptophan biosynthesis
Effector:
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Vibrio cholerae O1 biovar eltor str. N16961 6 1
Vibrio vulnificus CMCP6 6 1
Vibrio harveyi ATCC BAA-1116 6 1
Vibrio parahaemolyticus RIMD 2210633 6 1
Vibrio shilonii AK1 6 1
Vibrio splendidus LGP32 6 1
Vibrio fischeri ES114 7 1
Vibrio salmonicida LFI1238 6 1
Vibrio angustum S14 7 1
Photobacterium profundum SS9 7 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
trpE
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -188
score = 77.08
sequence = ACTGGCTTGGTGGCG...

Gene: VC1174: Anthranilate synthase, aminase component (EC 4.1.3.27)
*
Vibrio vulnificus CMCP6

Site:
position = -230
score = 74.71
sequence = TCGCTTGGTGGCGCA...

Gene: VV1_3064: Anthranilate synthase, aminase component (EC 4.1.3.27)
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -228
score = 67.32
sequence = TTGCTTGGTGGCGCA...

Gene: VIBHAR_02758: Anthranilate synthase, aminase component (EC 4.1.3.27)
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -228
score = 74.22
sequence = TTGCTTGGTGGCGCA...

Gene: VP1956: Anthranilate synthase, aminase component (EC 4.1.3.27)
*
Vibrio shilonii AK1

Site:
position = -230
score = 45.79
sequence = ACAAGGTTGGTGGCG...

Gene: VSAK1_01022: Anthranilate synthase, aminase component (EC 4.1.3.27)
*
Vibrio splendidus LGP32

Site:
position = -191
score = 67.4
sequence = TTAATTGGTGGCGCA...

Gene: VS_1966: Anthranilate synthase, aminase component (EC 4.1.3.27)
*2
Vibrio fischeri ES114

Site:
position = -226
score = 23.11
sequence = TCACGATGGTGGCAC...

Gene: VF_2602: Anthranilate synthase, aminase component (EC 4.1.3.27)

Gene: VF_1033: Anthranilate synthase, aminase component (EC 4.1.3.27)
*
Vibrio salmonicida LFI1238

Site:
position = -213
score = 35.05
sequence = TCAACGTTGGTGGCA...

Gene: VSAL_I1154: Anthranilate synthase, aminase component (EC 4.1.3.27)
 
Vibrio angustum S14

Gene: VAS14_18369: Anthranilate synthase, aminase component (EC 4.1.3.27)
 
Photobacterium profundum SS9

Gene: PBPRA2486: Anthranilate synthase, aminase component (EC 4.1.3.27)
Anthranilate synthase, aminase component (EC 4.1.3.27)
trpG
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC1173: Anthranilate synthase, amidotransferase component (EC 4.1.3.27)
 
Vibrio vulnificus CMCP6

Gene: VV1_3065: Anthranilate synthase, amidotransferase component (EC 4.1.3.27)
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_02759: Anthranilate synthase, amidotransferase component (EC 4.1.3.27)
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP1957: Anthranilate synthase, amidotransferase component (EC 4.1.3.27)
 
Vibrio shilonii AK1

Gene: VSAK1_01017: Anthranilate synthase, amidotransferase component (EC 4.1.3.27)
 
Vibrio splendidus LGP32

Gene: VS_1967: Anthranilate synthase, amidotransferase component (EC 4.1.3.27)
 
Vibrio fischeri ES114

Gene: VF_1032: Anthranilate synthase, amidotransferase component (EC 4.1.3.27)
 
Vibrio salmonicida LFI1238

Gene: VSAL_I1153: Anthranilate synthase, amidotransferase component (EC 4.1.3.27)
 
Vibrio angustum S14

Gene: VAS14_18364: Anthranilate synthase, amidotransferase component (EC 4.1.3.27)
 
Photobacterium profundum SS9

Gene: PBPRA2487: Anthranilate synthase, amidotransferase component (EC 4.1.3.27)
Anthranilate synthase, amidotransferase component (EC 4.1.3.27)
trpD
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC1172: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
 
Vibrio vulnificus CMCP6

Gene: VV1_3066: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_02760: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP1958: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
 
Vibrio shilonii AK1

Gene: VSAK1_01012: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
 
Vibrio splendidus LGP32

Gene: VS_1968: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
 
Vibrio fischeri ES114

Gene: VF_1031: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
 
Vibrio salmonicida LFI1238

Gene: VSAL_I1152: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
 
Vibrio angustum S14

Gene: VAS14_18359: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
 
Photobacterium profundum SS9

Gene: PBPRA2488: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
trpC
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC1171: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Vibrio vulnificus CMCP6

Gene: VV1_3067: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_02761: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP1959: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Vibrio shilonii AK1

Gene: VSAK1_01007: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Vibrio splendidus LGP32

Gene: VS_1969: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Vibrio fischeri ES114

Gene: VF_1029: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Vibrio salmonicida LFI1238

Gene: VSAL_I1151: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Vibrio angustum S14

Gene: VAS14_18354: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Photobacterium profundum SS9

Gene: PBPRA2489: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
trpB
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC1170: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Vibrio vulnificus CMCP6

Gene: VV1_3068: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_02762: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP1960: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Vibrio shilonii AK1

Gene: VSAK1_01002: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Vibrio splendidus LGP32

Gene: VS_1970: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Vibrio fischeri ES114

Gene: VF_1028: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Vibrio salmonicida LFI1238

Gene: VSAL_I1150: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Vibrio angustum S14

Gene: VAS14_18349: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Photobacterium profundum SS9

Gene: PBPRA2490: Tryptophan synthase beta chain (EC 4.2.1.20)
Tryptophan synthase beta chain (EC 4.2.1.20)
trpA
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC1169: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Vibrio vulnificus CMCP6

Gene: VV1_3069: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_02763: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP1961: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Vibrio shilonii AK1

Gene: VSAK1_00997: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Vibrio splendidus LGP32

Gene: VS_1971: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Vibrio fischeri ES114

Gene: VF_1027: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Vibrio salmonicida LFI1238

Gene: VSAL_I1149: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Vibrio angustum S14

Gene: VAS14_18344: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Photobacterium profundum SS9

Gene: PBPRA2491: Tryptophan synthase alpha chain (EC 4.2.1.20)
Tryptophan synthase alpha chain (EC 4.2.1.20)
aroF2
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
*
Vibrio angustum S14

Site:
position = -174
score = 55.5
sequence = CAATAATTGGTGGTG...

Gene: VAS14_18374: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54)
*
Photobacterium profundum SS9

Site:
position = -174
score = 42.48
sequence = TCTCATGGTGGTGGC...

Gene: PBPRA2485: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54)
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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