Regulog yybP-ykoY - Vibrionales
| Regulator type: | RNA regulatory element |
| Name: | yybP-ykoY |
| RFAM: | RF00080 |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Vibrionales
- By RNA motif - yybP-ykoY
| Genome | Genes | Operons |
|---|---|---|
| Vibrio cholerae O1 biovar eltor str. N16961 | 2 | 2 |
| Vibrio vulnificus CMCP6 | 3 | 3 |
| Vibrio harveyi ATCC BAA-1116 | 2 | 2 |
| Vibrio parahaemolyticus RIMD 2210633 | 2 | 2 |
| Vibrio shilonii AK1 | 2 | 2 |
| Vibrio splendidus LGP32 | 2 | 2 |
| Vibrio fischeri ES114 | 2 | 2 |
| Vibrio salmonicida LFI1238 | 3 | 3 |
| Vibrio angustum S14 | 2 | 2 |
| Photobacterium profundum SS9 | 2 | 2 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| ykoY |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -209 score = 49.21 sequence = GGCGACGTTTTGGGG... Gene: VCA0546: Integral membrane protein TerC |
*
Vibrio vulnificus CMCP6 Site: position = -304 score = 39.26 sequence = ATCGAACGTTTGGGG... Gene: VV20239: Integral membrane protein TerC |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -209 score = 43.32 sequence = TGATGGCGGCGTTTG... Gene: VIBHAR_05912: Integral membrane protein TerC |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -285 score = 47.05 sequence = ATGGCGGCGTTTGGG... Gene: VPA0856: Integral membrane protein TerC |
*
Vibrio shilonii AK1 Site: position = -196 score = 56.23 sequence = CCGCTCGTTTTGGGG... Gene: VSAK1_14500: Integral membrane protein TerC |
*
Vibrio splendidus LGP32 Site: position = -155 score = 49.59 sequence = TTATCCACGCGTTTG... Gene: VS_II0779: Integral membrane protein TerC |
*
Vibrio fischeri ES114 Site: position = -216 score = 49.64 sequence = TATCCAGATCATTGG... Gene: VF_A0278: Integral membrane protein TerC |
*2
Vibrio salmonicida LFI1238 Site: position = -218 score = 55.93 sequence = CTATCCGAGTCTTGG... Gene: VSAL_II0027: Integral membrane protein TerC Site: position = -218 score = 55.93 sequence = CTATCCGAGTCTTGG... Gene: VSAL_II1094: Integral membrane protein TerC |
*
Vibrio angustum S14 Site: position = -381 score = 51.6 sequence = ATCGCCTTGTTTTGG... Gene: VAS14_02281: Integral membrane protein TerC |
*
Photobacterium profundum SS9 Site: position = -228 score = 54.5 sequence = TGCCCCTGTTTGGGG... Gene: PBPRA2002: Integral membrane protein TerC |
Integral membrane protein TerC |
| CRON 2. | |||||||||||
| COG2119 |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -153 score = 60.87 sequence = GCTCCGTCTTTGGGG... Gene: VC0022: hypothetical protein |
*
Vibrio vulnificus CMCP6 Site: position = -206 score = 54.35 sequence = TGCGCCTGTCTTTGG... Gene: VV1_0988: hypothetical protein |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -207 score = 55.52 sequence = CGCTTGTCTTTGGGG... Gene: VIBHAR_00451: hypothetical protein |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -205 score = 55.95 sequence = CGCCTGTCTTTGGGG... Gene: VP0023: hypothetical protein |
*
Vibrio shilonii AK1 Site: position = -203 score = 62.38 sequence = CCGCCATCTTTGGGG... Gene: VSAK1_12657: hypothetical protein |
*
Vibrio splendidus LGP32 Site: position = -209 score = 47.12 sequence = TCGCGGTCTTTGGGG... Gene: VS_0035: hypothetical protein |
*
Vibrio fischeri ES114 Site: position = -208 score = 60.34 sequence = CCTTACTCTTTGGGG... Gene: VF_A0964: hypothetical protein |
*
Vibrio salmonicida LFI1238 Site: position = -212 score = 55.05 sequence = GCCCTTACTCTTTGG... Gene: VSAL_II1080: hypothetical protein |
*
Vibrio angustum S14 Site: position = -148 score = 69.68 sequence = TTAGCTTTCCTTTGG... Gene: VAS14_22332: hypothetical protein |
*
Photobacterium profundum SS9 Site: position = -202 score = 71.8 sequence = CCGTTTCCTTTGGGG... Gene: PBPRA0058: hypothetical protein |
hypothetical protein |
| CRON 3. | |||||||||||
| COG0530 |
|
*
Vibrio vulnificus CMCP6 Site: position = -323 score = 52.53 sequence = ATAGCGCCGCTTAAG... Gene: VV20505: Inner membrane protein YrbG, predicted calcium/sodium:proton antiporter |
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Inner membrane protein YrbG, predicted calcium/sodium:proton antiporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |