Regulog PrpR - Vibrionales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Methylcitrate utilization |
| Effector: | 2-methylcitrate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Vibrionales
- By trascription factor - PrpR
- By TF family - GntR/Others
- By effector - 2-methylcitrate
- By pathway - Methylcitrate utilization
| Genome | Genes | Operons |
|---|---|---|
| Vibrio cholerae O1 biovar eltor str. N16961 | 6 | 1 |
| Vibrio vulnificus CMCP6 | 6 | 1 |
| Vibrio harveyi ATCC BAA-1116 | 6 | 1 |
| Vibrio parahaemolyticus RIMD 2210633 | 6 | 1 |
| Vibrio shilonii AK1 | 6 | 1 |
| Vibrio splendidus LGP32 | 6 | 1 |
| Vibrio fischeri ES114 | ||
| Vibrio salmonicida LFI1238 | ||
| Vibrio angustum S14 | ||
| Photobacterium profundum SS9 | 5 | 1 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| prpR |
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Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -124 score = 5.27921 sequence = AGTGTCGACAAT Site: position = -105 score = 5.37784 sequence = ATTGTCGACACT Site: position = -36 score = 3.67962 sequence = GTTGTGAACAGT Gene: VC1335: Propionate catabolism operon transcriptional regulator of GntR family |
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Vibrio vulnificus CMCP6 Site: position = -99 score = 5.82454 sequence = ATTGTCGACAAT Site: position = -80 score = 5.82454 sequence = ATTGTCGACAAT Site: position = -37 score = 4.13989 sequence = ATTGTTGACAGA Gene: VV1_2733: Propionate catabolism operon transcriptional regulator of GntR family |
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Vibrio harveyi ATCC BAA-1116 Site: position = -83 score = 5.82454 sequence = ATTGTCGACAAT Site: position = -102 score = 5.82454 sequence = ATTGTCGACAAT Site: position = -186 score = 5.82454 sequence = ATTGTCGACAAT Site: position = -40 score = 4.91757 sequence = ATTGTTGACACT Gene: VIBHAR_02398: Propionate catabolism operon transcriptional regulator of GntR family |
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Vibrio parahaemolyticus RIMD 2210633 Site: position = -83 score = 5.37784 sequence = ATTGTCGACACT Site: position = -40 score = 4.67855 sequence = ATTGTAGACACT Site: position = -196 score = 5.36427 sequence = GTTGTCGACAAT Site: position = -102 score = 5.82454 sequence = ATTGTCGACAAT Gene: VP1649: Propionate catabolism operon transcriptional regulator of GntR family |
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Vibrio shilonii AK1 Site: position = -39 score = 4.67165 sequence = ACTGTCAACAAT Site: position = -102 score = 5.82454 sequence = ATTGTCGACAAT Gene: VSAK1_25705: Propionate catabolism operon transcriptional regulator of GntR family |
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Vibrio splendidus LGP32 Site: position = -262 score = 4.22495 sequence = GTTGTCGACACA Site: position = -107 score = 5.82454 sequence = ATTGTCGACAAT Site: position = -88 score = 5.82454 sequence = ATTGTCGACAAT Site: position = -45 score = 4.37224 sequence = GTTGTTGACAGT Gene: VS_1342: Propionate catabolism operon transcriptional regulator of GntR family |
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Photobacterium profundum SS9 Site: position = -97 score = 4.91067 sequence = ATTGTTAACAAT Site: position = -34 score = 5.36427 sequence = ATTGTTGACAAT Site: position = -202 score = 4.75411 sequence = ATTGTCTACAGT Site: position = -130 score = 5.12525 sequence = ACTGTCGACAAT Gene: PBPRB0234: Propionate catabolism operon transcriptional regulator of GntR family |
Propionate catabolism operon transcriptional regulator of GntR family |
| prpB |
Gene: VC1336: Methylisocitrate lyase (EC 4.1.3.30) |
Gene: VV1_2732: Methylisocitrate lyase (EC 4.1.3.30) |
Gene: VIBHAR_02397: Methylisocitrate lyase (EC 4.1.3.30) |
Gene: VP1648: Methylisocitrate lyase (EC 4.1.3.30) |
Gene: VSAK1_25710: Methylisocitrate lyase (EC 4.1.3.30) |
Gene: VS_1343: Methylisocitrate lyase (EC 4.1.3.30) |
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Gene: PBPRB0235: Methylisocitrate lyase (EC 4.1.3.30) |
Methylisocitrate lyase (EC 4.1.3.30) |
| prpC |
Gene: VC1337: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: VV1_2731: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: VIBHAR_02396: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: VP1647: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: VSAK1_25715: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: VS_1344: 2-methylcitrate synthase (EC 2.3.3.5) |
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Gene: PBPRB0236: 2-methylcitrate synthase (EC 2.3.3.5) |
2-methylcitrate synthase (EC 2.3.3.5) |
| acnD |
Gene: VC1338: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
Gene: VV1_2730: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
Gene: VIBHAR_02395: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
Gene: VP1646: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
Gene: VSAK1_25720: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
Gene: VS_1345: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
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Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
| prpF |
Gene: VC1339: Aconitase accessory protein PrpF |
Gene: VV1_2729: Aconitase accessory protein PrpF |
Gene: VIBHAR_02394: Aconitase accessory protein PrpF |
Gene: VP1645: Aconitase accessory protein PrpF |
Gene: VSAK1_25725: Aconitase accessory protein PrpF |
Gene: VS_1346: Aconitase accessory protein PrpF |
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Aconitase accessory protein PrpF |
| prpE |
Gene: VC1340: Propionyl-CoA synthetase (EC 6.2.1.17) |
Gene: VV1_2728: Propionyl-CoA synthetase (EC 6.2.1.17) |
Gene: VIBHAR_02393: Propionyl-CoA synthetase (EC 6.2.1.17) |
Gene: VP1644: Propionyl-CoA synthetase (EC 6.2.1.17) |
Gene: VSAK1_25730: Propionyl-CoA synthetase (EC 6.2.1.17) |
Gene: VS_1347: Propionyl-CoA synthetase (EC 6.2.1.17) |
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Gene: PBPRB0238: Propionyl-CoA synthetase (EC 6.2.1.17) |
Propionyl-CoA synthetase (EC 6.2.1.17) |
| prpD |
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Gene: PBPRB0237: 2-methylcitrate dehydratase (EC 4.2.1.79) |
2-methylcitrate dehydratase (EC 4.2.1.79) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |