Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PrpR - Vibrionales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Methylcitrate utilization
Effector: 2-methylcitrate
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 24 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Vibrio cholerae O1 biovar eltor str. N16961 6 1
Vibrio vulnificus CMCP6 6 1
Vibrio harveyi ATCC BAA-1116 6 1
Vibrio parahaemolyticus RIMD 2210633 6 1
Vibrio shilonii AK1 6 1
Vibrio splendidus LGP32 6 1
Vibrio fischeri ES114
Vibrio salmonicida LFI1238
Vibrio angustum S14
Photobacterium profundum SS9 5 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
prpR
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -124
score = 5.27921
sequence = AGTGTCGACAAT

Site:
position = -105
score = 5.37784
sequence = ATTGTCGACACT

Site:
position = -36
score = 3.67962
sequence = GTTGTGAACAGT

Gene: VC1335: Propionate catabolism operon transcriptional regulator of GntR family
*
Vibrio vulnificus CMCP6

Site:
position = -99
score = 5.82454
sequence = ATTGTCGACAAT

Site:
position = -80
score = 5.82454
sequence = ATTGTCGACAAT

Site:
position = -37
score = 4.13989
sequence = ATTGTTGACAGA

Gene: VV1_2733: Propionate catabolism operon transcriptional regulator of GntR family
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -83
score = 5.82454
sequence = ATTGTCGACAAT

Site:
position = -102
score = 5.82454
sequence = ATTGTCGACAAT

Site:
position = -186
score = 5.82454
sequence = ATTGTCGACAAT

Site:
position = -40
score = 4.91757
sequence = ATTGTTGACACT

Gene: VIBHAR_02398: Propionate catabolism operon transcriptional regulator of GntR family
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -83
score = 5.37784
sequence = ATTGTCGACACT

Site:
position = -40
score = 4.67855
sequence = ATTGTAGACACT

Site:
position = -196
score = 5.36427
sequence = GTTGTCGACAAT

Site:
position = -102
score = 5.82454
sequence = ATTGTCGACAAT

Gene: VP1649: Propionate catabolism operon transcriptional regulator of GntR family
*
Vibrio shilonii AK1

Site:
position = -39
score = 4.67165
sequence = ACTGTCAACAAT

Site:
position = -102
score = 5.82454
sequence = ATTGTCGACAAT

Gene: VSAK1_25705: Propionate catabolism operon transcriptional regulator of GntR family
*
Vibrio splendidus LGP32

Site:
position = -262
score = 4.22495
sequence = GTTGTCGACACA

Site:
position = -107
score = 5.82454
sequence = ATTGTCGACAAT

Site:
position = -88
score = 5.82454
sequence = ATTGTCGACAAT

Site:
position = -45
score = 4.37224
sequence = GTTGTTGACAGT

Gene: VS_1342: Propionate catabolism operon transcriptional regulator of GntR family
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
*
Photobacterium profundum SS9

Site:
position = -97
score = 4.91067
sequence = ATTGTTAACAAT

Site:
position = -34
score = 5.36427
sequence = ATTGTTGACAAT

Site:
position = -202
score = 4.75411
sequence = ATTGTCTACAGT

Site:
position = -130
score = 5.12525
sequence = ACTGTCGACAAT

Gene: PBPRB0234: Propionate catabolism operon transcriptional regulator of GntR family
Propionate catabolism operon transcriptional regulator of GntR family
prpB
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC1336: Methylisocitrate lyase (EC 4.1.3.30)
 
Vibrio vulnificus CMCP6

Gene: VV1_2732: Methylisocitrate lyase (EC 4.1.3.30)
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_02397: Methylisocitrate lyase (EC 4.1.3.30)
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP1648: Methylisocitrate lyase (EC 4.1.3.30)
 
Vibrio shilonii AK1

Gene: VSAK1_25710: Methylisocitrate lyase (EC 4.1.3.30)
 
Vibrio splendidus LGP32

Gene: VS_1343: Methylisocitrate lyase (EC 4.1.3.30)
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9

Gene: PBPRB0235: Methylisocitrate lyase (EC 4.1.3.30)
Methylisocitrate lyase (EC 4.1.3.30)
prpC
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC1337: 2-methylcitrate synthase (EC 2.3.3.5)
 
Vibrio vulnificus CMCP6

Gene: VV1_2731: 2-methylcitrate synthase (EC 2.3.3.5)
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_02396: 2-methylcitrate synthase (EC 2.3.3.5)
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP1647: 2-methylcitrate synthase (EC 2.3.3.5)
 
Vibrio shilonii AK1

Gene: VSAK1_25715: 2-methylcitrate synthase (EC 2.3.3.5)
 
Vibrio splendidus LGP32

Gene: VS_1344: 2-methylcitrate synthase (EC 2.3.3.5)
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9

Gene: PBPRB0236: 2-methylcitrate synthase (EC 2.3.3.5)
2-methylcitrate synthase (EC 2.3.3.5)
acnD
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC1338: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Vibrio vulnificus CMCP6

Gene: VV1_2730: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_02395: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP1646: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Vibrio shilonii AK1

Gene: VSAK1_25720: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Vibrio splendidus LGP32

Gene: VS_1345: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9
Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
prpF
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC1339: Aconitase accessory protein PrpF
 
Vibrio vulnificus CMCP6

Gene: VV1_2729: Aconitase accessory protein PrpF
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_02394: Aconitase accessory protein PrpF
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP1645: Aconitase accessory protein PrpF
 
Vibrio shilonii AK1

Gene: VSAK1_25725: Aconitase accessory protein PrpF
 
Vibrio splendidus LGP32

Gene: VS_1346: Aconitase accessory protein PrpF
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9
Aconitase accessory protein PrpF
prpE
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC1340: Propionyl-CoA synthetase (EC 6.2.1.17)
 
Vibrio vulnificus CMCP6

Gene: VV1_2728: Propionyl-CoA synthetase (EC 6.2.1.17)
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_02393: Propionyl-CoA synthetase (EC 6.2.1.17)
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP1644: Propionyl-CoA synthetase (EC 6.2.1.17)
 
Vibrio shilonii AK1

Gene: VSAK1_25730: Propionyl-CoA synthetase (EC 6.2.1.17)
 
Vibrio splendidus LGP32

Gene: VS_1347: Propionyl-CoA synthetase (EC 6.2.1.17)
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9

Gene: PBPRB0238: Propionyl-CoA synthetase (EC 6.2.1.17)
Propionyl-CoA synthetase (EC 6.2.1.17)
prpD
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9

Gene: PBPRB0237: 2-methylcitrate dehydratase (EC 4.2.1.79)
2-methylcitrate dehydratase (EC 4.2.1.79)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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