Collection of regulogs for PrpR transcription factor
| Genomes | 85 |
| TF regulogs | 9 |
| TF regulons | 57 |
| TF binding sites | 161 |
Transcription factor PrpR from the GntR protein family regulates the propionate catabolism in Proteobacteria. The PrpR regulon and its DNA-binding motif were discovered by application of the comparative genomic approach, first in Shewanella spp. [21810205]. The GntR-family PrpR regulator is a non-orthologous replacement for other regulators of propionate catabolism such as the Fis-family activator PrpR in E.coli.
| Phylum | Regulog | TF regulons (studied genomes) | TFBSs | Logo |
|---|---|---|---|---|
| Proteobacteria/beta | PrpR - Comamonadaceae | 1 (11) | 2 |  |
| Proteobacteria/delta | PrpR - Desulfuromonadales | 3 (9) | 6 |  |
| Proteobacteria/gamma | PrpR - Alteromonadales | 9 (9) | 29 |  |
| Proteobacteria/gamma | PrpR - Moraxellaceae | 2 (4) | 5 |  |
| Proteobacteria/gamma | PrpR - Oceanospirillales/Alteromonadales | 9 (12) | 25 |  |
| Proteobacteria/gamma | PrpR - Pseudomonadaceae | 8 (8) | 17 |  |
| Proteobacteria/gamma | PrpR - Psychromonadaceae/Aeromonadales | 2 (6) | 5 |  |
| Proteobacteria/gamma | PrpR - Shewanellaceae | 16 (16) | 48 |  |
| Proteobacteria/gamma | PrpR - Vibrionales | 7 (10) | 24 |  |