Regulog PrpR - Alteromonadales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Methylcitrate utilization |
| Effector: | 2-methylcitrate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alteromonadales
- By trascription factor - PrpR
- By TF family - GntR/Others
- By effector - 2-methylcitrate
- By pathway - Methylcitrate utilization
| Genome | Genes | Operons |
|---|---|---|
| Pseudoalteromonas atlantica T6c | 5 | 1 |
| Alteromonas macleodii 'Deep ecotype' | 2 | 1 |
| Glaciecola sp. HTCC2999 | 5 | 1 |
| Colwellia psychrerythraea 34H | 6 | 4 |
| Alteromonadales bacterium TW-7 | 5 | 1 |
| Pseudoalteromonas haloplanktis TAC125 | 5 | 1 |
| Pseudoalteromonas tunicata D2 | 5 | 1 |
| Idiomarina baltica OS145 | 5 | 1 |
| Idiomarina loihiensis L2TR | 5 | 1 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| MADE_03684 |
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Gene: MADE_03684: putative membrane protein |
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Colwellia psychrerythraea 34H Site: position = -162 score = 4.21138 sequence = CTTGTTAACAAT Site: position = -93 score = 5.82454 sequence = ATTGTCGACAAT Site: position = -31 score = 5.82454 sequence = ATTGTCGACAAT Gene: CPS_2159: putative membrane protein |
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putative membrane protein |
| CRON 2. | ||||||||||
| prpR |
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Pseudoalteromonas atlantica T6c Site: position = -116 score = 5.43002 sequence = ATTGTCGACAAC Site: position = -168 score = 5.82454 sequence = ATTGTCGACAAT Gene: Patl_1418: Propionate catabolism transcriptional regulator, GntR family |
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Alteromonas macleodii 'Deep ecotype' Site: position = -87 score = 5.36427 sequence = GTTGTCGACAAT Site: position = -34 score = 5.29278 sequence = ATTGTCGACATT Gene: MADE_03369: Propionate catabolism transcriptional regulator, GntR family |
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Glaciecola sp. HTCC2999 Site: position = -91 score = 5.36427 sequence = GTTGTCGACAAT Site: position = -39 score = 5.82454 sequence = ATTGTCGACAAT Gene: GHTCC_010100001200: Propionate catabolism transcriptional regulator, GntR family |
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Colwellia psychrerythraea 34H Site: position = -69 score = 5.12525 sequence = TTTGTCGACAAT Site: position = -141 score = 5.82454 sequence = ATTGTCGACAAT Gene: CPS_2823: Propionate catabolism transcriptional regulator, GntR family |
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Alteromonadales bacterium TW-7 Site: position = -26 score = 5.82454 sequence = ATTGTCGACAAT Site: position = -113 score = 5.27921 sequence = AGTGTCGACAAT Site: position = -175 score = 4.21828 sequence = GCTGTCGACACT Gene: ATW7_14131: Propionate catabolism transcriptional regulator, GntR family |
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Pseudoalteromonas haloplanktis TAC125 Site: position = -25 score = 5.82454 sequence = ATTGTCGACAAT Site: position = -112 score = 4.81894 sequence = GATGTCGACAAT Site: position = -175 score = 4.37224 sequence = GGTGTCGACACT Gene: PSHAa1776: Propionate catabolism transcriptional regulator, GntR family |
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Pseudoalteromonas tunicata D2 Site: position = -88 score = 5.82454 sequence = ATTGTCGACAAT Site: position = -21 score = 5.13192 sequence = ATTGTCGACAAA Site: position = -150 score = 4.14655 sequence = ATTGTCAACATA Gene: PTD2_20517: Propionate catabolism transcriptional regulator, GntR family |
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Idiomarina baltica OS145 Site: position = -17 score = 4.57992 sequence = TATGTCGACAAT Site: position = -90 score = 5.82454 sequence = ATTGTCGACAAT Gene: OS145_00715: Propionate catabolism transcriptional regulator, GntR family |
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Idiomarina loihiensis L2TR Site: position = -86 score = 5.82454 sequence = ATTGTCGACAAT Site: position = -14 score = 5.12525 sequence = ACTGTCGACAAT Gene: IL1428: Propionate catabolism transcriptional regulator, GntR family |
Propionate catabolism transcriptional regulator, GntR family |
| prpB |
Gene: Patl_1419: Methylisocitrate lyase (EC 4.1.3.30) |
Gene: MADE_03370: Methylisocitrate lyase (EC 4.1.3.30) |
Gene: GHTCC_010100001195: Methylisocitrate lyase (EC 4.1.3.30) |
Gene: CPS_2822: Methylisocitrate lyase (EC 4.1.3.30) |
Gene: ATW7_14126: Methylisocitrate lyase (EC 4.1.3.30) |
Gene: PSHAa1775: Methylisocitrate lyase (EC 4.1.3.30) |
Gene: PTD2_20512: Methylisocitrate lyase (EC 4.1.3.30) |
Gene: OS145_00710: Methylisocitrate lyase (EC 4.1.3.30) |
Gene: IL1427: Methylisocitrate lyase (EC 4.1.3.30) |
Methylisocitrate lyase (EC 4.1.3.30) |
| prpC |
Gene: Patl_1420: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: MADE_03371: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: GHTCC_010100001190: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: CPS_2821: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: ATW7_14121: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: PSHAa1774: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: PTD2_20507: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: OS145_00705: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: IL1426: 2-methylcitrate synthase (EC 2.3.3.5) |
2-methylcitrate synthase (EC 2.3.3.5) |
| acnD |
Gene: Patl_1421: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
Gene: MADE_03372: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
Gene: GHTCC_010100001185: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
Gene: CPS_2820: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
Gene: ATW7_14116: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
Gene: PSHAa1773: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
Gene: PTD2_20502: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
Gene: OS145_00700: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
Gene: IL1425: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
| prpF |
Gene: Patl_1422: Aconitase accessory protein PrpF |
Gene: MADE_03373: Aconitase accessory protein PrpF |
Gene: GHTCC_010100001180: Aconitase accessory protein PrpF |
Gene: CPS_2819: Aconitase accessory protein PrpF |
Gene: ATW7_14111: Aconitase accessory protein PrpF |
Gene: PSHAa1772: Aconitase accessory protein PrpF |
Gene: PTD2_20497: Aconitase accessory protein PrpF |
Gene: OS145_00695: Aconitase accessory protein PrpF |
Gene: IL1424: Aconitase accessory protein PrpF |
Aconitase accessory protein PrpF |
| CRON 3. | ||||||||||
| acnB |
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Colwellia psychrerythraea 34H Site: position = -142 score = 5.27921 sequence = AGTGTCGACAAT Site: position = -292 score = 4.40059 sequence = ATTTCCGACAAT Site: position = -27 score = 4.02857 sequence = AGTGTCTCCAAT Gene: CPS_4800: Aconitate hydratase 2 (EC 4.2.1.3) |
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Aconitate hydratase 2 (EC 4.2.1.3) |
| CRON 4. | ||||||||||
| prpE |
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Gene: MADE_02248: Propionyl CoA synthase |
Gene: GHTCC_010100005487: Propionyl CoA synthase |
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Colwellia psychrerythraea 34H Site: position = -53 score = 4.59349 sequence = TTTGTCGACAGT Site: position = -265 score = 4.60016 sequence = ATTGTCGACATA Gene: CPS_0917: Propionyl CoA synthase |
Gene: ATW7_03767: Propionyl CoA synthase |
Gene: PSHAa2444: Propionyl CoA synthase |
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Gene: OS145_11861: Propionyl CoA synthase |
Gene: IL1063: Propionyl CoA synthase |
Propionyl CoA synthase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |