Regulog PrpR - Shewanellaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Methylcitrate utilization
Effector:	2-methylcitrate
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 48 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - PrpR
By TF family - GntR/Others
By effector - 2-methylcitrate
By pathway - Methylcitrate utilization

Statistics of regulated genes
Genome	Genes	Operons
Shewanella oneidensis MR-1	5	1
Shewanella putrefaciens CN-32	5	1
Shewanella sp W3-18-1	6	1
Shewanella sp ANA-3	5	1
Shewanella sp MR-4	5	1
Shewanella sp MR-7	5	1
Shewanella baltica OS155	6	1
Shewanella denitrificans OS217	5	1
Shewanella frigidimarina NCIMB 400	5	1
Shewanella amazonensis SB2B	5	1
Shewanella loihica PV-4	6	2
Shewanella pealeana ATCC 700345	5	1
Shewanella halifaxensis HAW-EB4	5	1
Shewanella piezotolerans WP3	5	1
Shewanella sediminis HAW-EB3	6	2
Shewanella woodyi ATCC 51908	5	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																	Function

CRON 1.
prpR	* Shewanella oneidensis MR-1 Site: position = -86 score = 5.86661 sequence = ATTGTCGACAAT Site: position = -256 score = 5.86661 sequence = ATTGTCGACAAT Site: position = -125 score = 5.1775 sequence = ATTGTTGACAAT Gene: SO0346: Propionate catabolism operon transcriptional regulator of GntR family	* Shewanella putrefaciens CN-32 Site: position = -34 score = 5.86661 sequence = ATTGTCGACAAT Site: position = -73 score = 5.1775 sequence = ATTGTTGACAAT Site: position = -204 score = 5.1775 sequence = ATTGTTGACAAT Gene: Sputcn32_3643: Propionate catabolism operon transcriptional regulator of GntR family	* Shewanella sp W3-18-1 Site: position = -34 score = 5.86661 sequence = ATTGTCGACAAT Site: position = -73 score = 5.1775 sequence = ATTGTTGACAAT Site: position = -204 score = 5.1775 sequence = ATTGTTGACAAT Gene: Sputw3181_3783: Propionate catabolism operon transcriptional regulator of GntR family	* Shewanella sp ANA-3 Site: position = -208 score = 5.86661 sequence = ATTGTCGACAAT Site: position = -77 score = 5.1775 sequence = ATTGTTGACAAT Site: position = -38 score = 5.86661 sequence = ATTGTCGACAAT Gene: Shewana3_3824: Propionate catabolism operon transcriptional regulator of GntR family	* Shewanella sp MR-4 Site: position = -209 score = 5.86661 sequence = ATTGTCGACAAT Site: position = -38 score = 5.86661 sequence = ATTGTCGACAAT Site: position = -77 score = 5.1775 sequence = ATTGTTGACAAT Gene: Shewmr4_3628: Propionate catabolism operon transcriptional regulator of GntR family	* Shewanella sp MR-7 Site: position = -38 score = 5.86661 sequence = ATTGTCGACAAT Site: position = -209 score = 5.86661 sequence = ATTGTCGACAAT Site: position = -77 score = 5.1775 sequence = ATTGTTGACAAT Gene: Shewmr7_0316: Propionate catabolism operon transcriptional regulator of GntR family	* Shewanella baltica OS155 Site: position = -34 score = 5.86661 sequence = ATTGTCGACAAT Site: position = -73 score = 5.1775 sequence = ATTGTTGACAAT Site: position = -204 score = 5.1775 sequence = ATTGTTGACAAT Gene: Sbal_4046: Propionate catabolism operon transcriptional regulator of GntR family	* Shewanella denitrificans OS217 Site: position = -87 score = 5.54402 sequence = TTTGTCGACAAT Site: position = -65 score = 4.48838 sequence = ATTGTTGACCAT Site: position = -35 score = 5.44377 sequence = ATTGTCGACAAC Gene: Sden_1663: Propionate catabolism operon transcriptional regulator of GntR family	* Shewanella frigidimarina NCIMB 400 Site: position = -65 score = 5.44377 sequence = ATTGTCGACAAC Site: position = -117 score = 5.54402 sequence = ATTGTCGACAAA Gene: Sfri_1856: Propionate catabolism operon transcriptional regulator of GntR family	* Shewanella amazonensis SB2B Site: position = -83 score = 5.1775 sequence = ATTGTTGACAAT Site: position = -228 score = 4.75466 sequence = GTTGTTGACAAT Gene: Sama_3293: Propionate catabolism operon transcriptional regulator of GntR family	2 Shewanella loihica PV-4* Site: position = -150 score = 4.43207 sequence = GTTGTCAACAAA Site: position = -54 score = 5.1775 sequence = ATTGTTGACAAT Gene: Shew_0280: Propionate catabolism operon transcriptional regulator of GntR family Site: position = -292 score = 5.54402 sequence = TTTGTCGACAAT Site: position = -92 score = 5.54402 sequence = TTTGTCGACAAT Site: position = -40 score = 5.44377 sequence = ATTGTCGACAAC Gene: Shew_1819: Propionate catabolism operon transcriptional regulator of GntR family	* Shewanella pealeana ATCC 700345 Site: position = -93 score = 5.54402 sequence = TTTGTCGACAAT Site: position = -71 score = 4.48838 sequence = ATTGTTGACTAT Site: position = -41 score = 5.86661 sequence = ATTGTCGACAAT Gene: Spea_2323: Propionate catabolism operon transcriptional regulator of GntR family	* Shewanella halifaxensis HAW-EB4 Site: position = -41 score = 5.86661 sequence = ATTGTCGACAAT Site: position = -71 score = 5.1775 sequence = ATTGTTGACAAT Site: position = -93 score = 5.54402 sequence = TTTGTCGACAAT Gene: Shal_1960: Propionate catabolism operon transcriptional regulator of GntR family	* Shewanella piezotolerans WP3 Site: position = -92 score = 5.54402 sequence = TTTGTCGACAAT Site: position = -40 score = 5.86661 sequence = ATTGTCGACAAT Gene: swp_2427: Propionate catabolism operon transcriptional regulator of GntR family	2 Shewanella sediminis HAW-EB3* Site: position = -38 score = 5.86661 sequence = ATTGTCGACAAT Site: position = -91 score = 5.54402 sequence = TTTGTCGACAAT Gene: Ssed_2110: Propionate catabolism operon transcriptional regulator of GntR family Site: position = -188 score = 5.1775 sequence = ATTGTCAACAAT Site: position = -16 score = 4.48838 sequence = ATTGTCAACCAT Site: position = -56 score = 4.85491 sequence = ATTGTTGACAAA Gene: Ssed_4175: Propionate catabolism operon transcriptional regulator of GntR family	* Shewanella woodyi ATCC 51908 Site: position = -92 score = 5.86661 sequence = ATTGTCGACAAT Site: position = -40 score = 5.86661 sequence = ATTGTCGACAAT Gene: Swoo_2500: Propionate catabolism operon transcriptional regulator of GntR family	Propionate catabolism operon transcriptional regulator of GntR family
prpB	Shewanella oneidensis MR-1 Gene: SO0345: Methylisocitrate lyase (EC 4.1.3.30)	Shewanella putrefaciens CN-32 Gene: Sputcn32_3644: Methylisocitrate lyase (EC 4.1.3.30)	Shewanella sp W3-18-1 Gene: Sputw3181_3784: Methylisocitrate lyase (EC 4.1.3.30)	Shewanella sp ANA-3 Gene: Shewana3_3825: Methylisocitrate lyase (EC 4.1.3.30)	Shewanella sp MR-4 Gene: Shewmr4_3629: Methylisocitrate lyase (EC 4.1.3.30)	Shewanella sp MR-7 Gene: Shewmr7_0315: Methylisocitrate lyase (EC 4.1.3.30)	Shewanella baltica OS155 Gene: Sbal_4047: Methylisocitrate lyase (EC 4.1.3.30)	Shewanella denitrificans OS217 Gene: Sden_1664: Methylisocitrate lyase (EC 4.1.3.30)	Shewanella frigidimarina NCIMB 400 Gene: Sfri_1857: Methylisocitrate lyase (EC 4.1.3.30)	Shewanella amazonensis SB2B Gene: Sama_3294: Methylisocitrate lyase (EC 4.1.3.30)	Shewanella loihica PV-4 Gene: Shew_1820: Methylisocitrate lyase (EC 4.1.3.30)	Shewanella pealeana ATCC 700345 Gene: Spea_2322: Methylisocitrate lyase (EC 4.1.3.30)	Shewanella halifaxensis HAW-EB4 Gene: Shal_1961: Methylisocitrate lyase (EC 4.1.3.30)	Shewanella piezotolerans WP3 Gene: swp_2428: Methylisocitrate lyase (EC 4.1.3.30)	Shewanella sediminis HAW-EB3 Gene: Ssed_2111: Methylisocitrate lyase (EC 4.1.3.30)	Shewanella woodyi ATCC 51908 Gene: Swoo_2499: Methylisocitrate lyase (EC 4.1.3.30)	Methylisocitrate lyase (EC 4.1.3.30)
prpC	Shewanella oneidensis MR-1 Gene: SO0344: 2-methylcitrate synthase (EC 2.3.3.5)	Shewanella putrefaciens CN-32 Gene: Sputcn32_3645: 2-methylcitrate synthase (EC 2.3.3.5)	Shewanella sp W3-18-1 Gene: Sputw3181_3785: 2-methylcitrate synthase (EC 2.3.3.5)	Shewanella sp ANA-3 Gene: Shewana3_3826: 2-methylcitrate synthase (EC 2.3.3.5)	Shewanella sp MR-4 Gene: Shewmr4_3630: 2-methylcitrate synthase (EC 2.3.3.5)	Shewanella sp MR-7 Gene: Shewmr7_0314: 2-methylcitrate synthase (EC 2.3.3.5)	Shewanella baltica OS155 Gene: Sbal_4048: 2-methylcitrate synthase (EC 2.3.3.5)	Shewanella denitrificans OS217 Gene: Sden_1665: 2-methylcitrate synthase (EC 2.3.3.5)	Shewanella frigidimarina NCIMB 400 Gene: Sfri_1858: 2-methylcitrate synthase (EC 2.3.3.5)	Shewanella amazonensis SB2B Gene: Sama_3295: 2-methylcitrate synthase (EC 2.3.3.5)	Shewanella loihica PV-4 Gene: Shew_1821: 2-methylcitrate synthase (EC 2.3.3.5)	Shewanella pealeana ATCC 700345 Gene: Spea_2321: 2-methylcitrate synthase (EC 2.3.3.5)	Shewanella halifaxensis HAW-EB4 Gene: Shal_1962: 2-methylcitrate synthase (EC 2.3.3.5)	Shewanella piezotolerans WP3 Gene: swp_2429: 2-methylcitrate synthase (EC 2.3.3.5)	Shewanella sediminis HAW-EB3 Gene: Ssed_2112: 2-methylcitrate synthase (EC 2.3.3.5)	Shewanella woodyi ATCC 51908 Gene: Swoo_2498: 2-methylcitrate synthase (EC 2.3.3.5)	2-methylcitrate synthase (EC 2.3.3.5)
acnD	Shewanella oneidensis MR-1 Gene: SO0343: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)	Shewanella putrefaciens CN-32 Gene: Sputcn32_3646: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)	Shewanella sp W3-18-1 Gene: Sputw3181_3786: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)	Shewanella sp ANA-3 Gene: Shewana3_3827: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)	Shewanella sp MR-4 Gene: Shewmr4_3631: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)	Shewanella sp MR-7 Gene: Shewmr7_0313: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)	Shewanella baltica OS155 Gene: Sbal_4049: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)	Shewanella denitrificans OS217 Gene: Sden_1666: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)	Shewanella frigidimarina NCIMB 400 Gene: Sfri_1859: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)	Shewanella amazonensis SB2B Gene: Sama_3296: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)	Shewanella loihica PV-4 Gene: Shew_1822: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)	Shewanella pealeana ATCC 700345 Gene: Spea_2320: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)	Shewanella halifaxensis HAW-EB4 Gene: Shal_1963: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)	Shewanella piezotolerans WP3 Gene: swp_2430: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)	Shewanella sediminis HAW-EB3 Gene: Ssed_2113: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)	Shewanella woodyi ATCC 51908 Gene: Swoo_2497: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)	Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
prpF	Shewanella oneidensis MR-1 Gene: SO0342: Aconitase accessory protein PrpF	Shewanella putrefaciens CN-32 Gene: Sputcn32_3647: Aconitase accessory protein PrpF	Shewanella sp W3-18-1 Gene: Sputw3181_3787: Aconitase accessory protein PrpF	Shewanella sp ANA-3 Gene: Shewana3_3828: Aconitase accessory protein PrpF	Shewanella sp MR-4 Gene: Shewmr4_3632: Aconitase accessory protein PrpF	Shewanella sp MR-7 Gene: Shewmr7_0312: Aconitase accessory protein PrpF	Shewanella baltica OS155 Gene: Sbal_4050: Aconitase accessory protein PrpF	Shewanella denitrificans OS217 Gene: Sden_1667: Aconitase accessory protein PrpF	Shewanella frigidimarina NCIMB 400 Gene: Sfri_1860: Aconitase accessory protein PrpF	Shewanella amazonensis SB2B Gene: Sama_3297: Aconitase accessory protein PrpF	Shewanella loihica PV-4 Gene: Shew_1823: Aconitase accessory protein PrpF	Shewanella pealeana ATCC 700345 Gene: Spea_2319: Aconitase accessory protein PrpF	Shewanella halifaxensis HAW-EB4 Gene: Shal_1964: Aconitase accessory protein PrpF	Shewanella piezotolerans WP3 Gene: swp_2431: Aconitase accessory protein PrpF	Shewanella sediminis HAW-EB3 Gene: Ssed_2114: Aconitase accessory protein PrpF	Shewanella woodyi ATCC 51908 Gene: Swoo_2496: Aconitase accessory protein PrpF	Aconitase accessory protein PrpF
prpB2	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1 Gene: Sputw3181_3788: Methylisocitrate lyase (EC 4.1.3.30)	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155 Gene: Sbal_4051: Methylisocitrate lyase (EC 4.1.3.30)	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Methylisocitrate lyase (EC 4.1.3.30)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PrpR - Shewanellaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --