Profile of regulator PrpR in Shewanellaceae
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Methylcitrate utilization |
| Effector: | 2-methylcitrate |
| Regulog: | PrpR - Shewanellaceae |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - PrpR
- By TF family - GntR/Others
- By effector - 2-methylcitrate
- By pathway - Methylcitrate utilization
Transcription factor binding sites
| Locus Tag | Name | Position | Score | Sequence | |
|---|---|---|---|---|---|
| Shewanella oneidensis MR-1 | |||||
| SO0346 | prpR | -86 | 5.9 | ATTGTCGACAAT | |
| SO0346 | prpR | -256 | 5.9 | ATTGTCGACAAT | |
| SO0346 | prpR | -125 | 5.2 | ATTGTTGACAAT | |
| Shewanella putrefaciens CN-32 | |||||
| Sputcn32_3643 | prpR | -34 | 5.9 | ATTGTCGACAAT | |
| Sputcn32_3643 | prpR | -73 | 5.2 | ATTGTTGACAAT | |
| Sputcn32_3643 | prpR | -204 | 5.2 | ATTGTTGACAAT | |
| Shewanella sp W3-18-1 | |||||
| Sputw3181_3783 | prpR | -34 | 5.9 | ATTGTCGACAAT | |
| Sputw3181_3783 | prpR | -73 | 5.2 | ATTGTTGACAAT | |
| Sputw3181_3783 | prpR | -204 | 5.2 | ATTGTTGACAAT | |
| Shewanella sp ANA-3 | |||||
| Shewana3_3824 | prpR | -208 | 5.9 | ATTGTCGACAAT | |
| Shewana3_3824 | prpR | -77 | 5.2 | ATTGTTGACAAT | |
| Shewana3_3824 | prpR | -38 | 5.9 | ATTGTCGACAAT | |
| Shewanella sp MR-4 | |||||
| Shewmr4_3628 | prpR | -209 | 5.9 | ATTGTCGACAAT | |
| Shewmr4_3628 | prpR | -38 | 5.9 | ATTGTCGACAAT | |
| Shewmr4_3628 | prpR | -77 | 5.2 | ATTGTTGACAAT | |
| Shewanella sp MR-7 | |||||
| Shewmr7_0316 | prpR | -38 | 5.9 | ATTGTCGACAAT | |
| Shewmr7_0316 | prpR | -209 | 5.9 | ATTGTCGACAAT | |
| Shewmr7_0316 | prpR | -77 | 5.2 | ATTGTTGACAAT | |
| Shewanella baltica OS155 | |||||
| Sbal_4046 | prpR | -34 | 5.9 | ATTGTCGACAAT | |
| Sbal_4046 | prpR | -73 | 5.2 | ATTGTTGACAAT | |
| Sbal_4046 | prpR | -204 | 5.2 | ATTGTTGACAAT | |
| Shewanella denitrificans OS217 | |||||
| Sden_1663 | prpR | -87 | 5.5 | TTTGTCGACAAT | |
| Sden_1663 | prpR | -65 | 4.5 | ATTGTTGACCAT | |
| Sden_1663 | prpR | -35 | 5.4 | ATTGTCGACAAC | |
| Shewanella frigidimarina NCIMB 400 | |||||
| Sfri_1856 | prpR | -65 | 5.4 | ATTGTCGACAAC | |
| Sfri_1856 | prpR | -117 | 5.5 | ATTGTCGACAAA | |
| Shewanella amazonensis SB2B | |||||
| Sama_3293 | prpR | -83 | 5.2 | ATTGTTGACAAT | |
| Sama_3293 | prpR | -228 | 4.8 | GTTGTTGACAAT | |
| Shewanella loihica PV-4 | |||||
| Shew_1819 | prpR | -292 | 5.5 | TTTGTCGACAAT | |
| Shew_1819 | prpR | -92 | 5.5 | TTTGTCGACAAT | |
| Shew_1819 | prpR | -40 | 5.4 | ATTGTCGACAAC | |
| Shew_0280 | prpR | -150 | 4.4 | GTTGTCAACAAA | |
| Shew_0280 | prpR | -54 | 5.2 | ATTGTTGACAAT | |
| Shewanella pealeana ATCC 700345 | |||||
| Spea_2323 | prpR | -93 | 5.5 | TTTGTCGACAAT | |
| Spea_2323 | prpR | -71 | 4.5 | ATTGTTGACTAT | |
| Spea_2323 | prpR | -41 | 5.9 | ATTGTCGACAAT | |
| Shewanella halifaxensis HAW-EB4 | |||||
| Shal_1960 | prpR | -41 | 5.9 | ATTGTCGACAAT | |
| Shal_1960 | prpR | -71 | 5.2 | ATTGTTGACAAT | |
| Shal_1960 | prpR | -93 | 5.5 | TTTGTCGACAAT | |
| Shewanella piezotolerans WP3 | |||||
| swp_2427 | prpR | -92 | 5.5 | TTTGTCGACAAT | |
| swp_2427 | prpR | -40 | 5.9 | ATTGTCGACAAT | |
| Shewanella sediminis HAW-EB3 | |||||
| Ssed_4175 | prpR | -188 | 5.2 | ATTGTCAACAAT | |
| Ssed_2110 | prpR | -38 | 5.9 | ATTGTCGACAAT | |
| Ssed_2110 | prpR | -91 | 5.5 | TTTGTCGACAAT | |
| Ssed_4175 | prpR | -16 | 4.5 | ATTGTCAACCAT | |
| Ssed_4175 | prpR | -56 | 4.9 | ATTGTTGACAAA | |
| Shewanella woodyi ATCC 51908 | |||||
| Swoo_2500 | prpR | -92 | 5.9 | ATTGTCGACAAT | |
| Swoo_2500 | prpR | -40 | 5.9 | ATTGTCGACAAT | |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |