Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of PrpR in Shewanella sediminis HAW-EB3

Properties
Regulator type: Transcription factor
TF locus tag: Ssed_2110, Ssed_4175
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Methylcitrate utilization
Effector: 2-methylcitrate
Regulog: PrpR - Shewanellaceae
Statistics of regulated genes:
- Genes 6
- Operons 2
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 48 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -188
Score: 5.2
Sequence: ATTGTCAACAAT
Position: -56
Score: 4.9
Sequence: ATTGTTGACAAA
Position: -16
Score: 4.5
Sequence: ATTGTCAACCAT
Locus tag: Ssed_4175
Name: prpR
Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Ssed_4175
prpR
Propionate catabolism operon transcriptional regulator of GntR family
Position: -91
Score: 5.5
Sequence: TTTGTCGACAAT
Position: -38
Score: 5.9
Sequence: ATTGTCGACAAT
Locus tag: Ssed_2110
Name: prpR
Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Ssed_2111
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Ssed_2112
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Ssed_2113
Name: acnD
Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Ssed_2114
Name: prpF
Funciton: Aconitase accessory protein PrpF
Ssed_2110
prpR
Propionate catabolism operon transcriptional regulator of GntR family
Ssed_2111
prpB
Methylisocitrate lyase (EC 4.1.3.30)
Ssed_2112
prpC
2-methylcitrate synthase (EC 2.3.3.5)
Ssed_2113
acnD
Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Ssed_2114
prpF
Aconitase accessory protein PrpF
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