Regulon of PrpR in Shewanella sediminis HAW-EB3
| Regulator type: | Transcription factor |
| TF locus tag: | Ssed_2110, Ssed_4175 |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Methylcitrate utilization |
| Effector: | 2-methylcitrate |
| Regulog: | PrpR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 6 |
| - Operons | 2 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - PrpR
- By TF family - GntR/Others
- By effector - 2-methylcitrate
- By pathway - Methylcitrate utilization
| Locus Tag | Name | Function | |
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Position: -188
Score: 5.2 Sequence: ATTGTCAACAAT
Position: -56
Score: 4.9 Sequence: ATTGTTGACAAA
Position: -16
Score: 4.5 Sequence: ATTGTCAACCAT
Locus tag: Ssed_4175
Name: prpR Funciton: Propionate catabolism operon transcriptional regulator of GntR family |
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prpR
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Propionate catabolism operon transcriptional regulator of GntR family
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Position: -91
Score: 5.5 Sequence: TTTGTCGACAAT
Position: -38
Score: 5.9 Sequence: ATTGTCGACAAT
Locus tag: Ssed_2110
Name: prpR Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Ssed_2111
Name: prpB Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Ssed_2112
Name: prpC Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Ssed_2113
Name: acnD Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Ssed_2114
Name: prpF Funciton: Aconitase accessory protein PrpF |
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prpR
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Propionate catabolism operon transcriptional regulator of GntR family
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prpB
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Methylisocitrate lyase (EC 4.1.3.30)
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prpC
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2-methylcitrate synthase (EC 2.3.3.5)
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acnD
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Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
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prpF
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Aconitase accessory protein PrpF
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |