Regulog PrpR - Psychromonadaceae/Aeromonadales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Methylcitrate utilization |
| Effector: | 2-methylcitrate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Psychromonadaceae/Aeromonadales
- By trascription factor - PrpR
- By TF family - GntR/Others
- By effector - 2-methylcitrate
- By pathway - Methylcitrate utilization
| Genome | Genes | Operons |
|---|---|---|
| Psychromonas ingrahamii 37 | 6 | 1 |
| Psychromonas sp. CNPT3 | ||
| Moritella sp. PE36 | 6 | 2 |
| Aeromonas hydrophila subsp. hydrophila ATCC 7966 | ||
| Aeromonas salmonicida subsp. salmonicida A449 | ||
| Tolumonas auensis DSM 9187 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| prpR |
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Psychromonas ingrahamii 37 Site: position = 18 score = 4.73073 sequence = ATTGTAGACAAC Site: position = -44 score = 5.82454 sequence = ATTGTCGACAAT Gene: Ping_1870: Propionate catabolism operon transcriptional regulator of GntR family [predicted] |
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*2
Moritella sp. PE36 Site: position = -55 score = 4.60016 sequence = ATTGTCGACATG Gene: PE36_01060: Propionate catabolism operon transcriptional regulator of GntR family [predicted] Site: position = -15 score = 5.82454 sequence = ATTGTCGACAAT Site: position = -63 score = 4.35867 sequence = GATGTTGACAAT Gene: PE36_01070: Propionate catabolism operon transcriptional regulator of GntR family [predicted] |
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Propionate catabolism operon transcriptional regulator of GntR family [predicted] |
| prpB |
Gene: Ping_1869: Methylisocitrate lyase (EC 4.1.3.30) |
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Gene: PE36_01055: Methylisocitrate lyase (EC 4.1.3.30) |
Gene: AHA_2265: Methylisocitrate lyase (EC 4.1.3.30) |
Gene: ASA_2041: Methylisocitrate lyase (EC 4.1.3.30) |
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Methylisocitrate lyase (EC 4.1.3.30) |
| prpC |
Gene: Ping_1868: 2-methylcitrate synthase (EC 2.3.3.5) |
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Gene: PE36_01050: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: AHA_2266: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: ASA_2040: 2-methylcitrate synthase (EC 2.3.3.5) |
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2-methylcitrate synthase (EC 2.3.3.5) |
| acnD |
Gene: Ping_1867: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
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Gene: PE36_01045: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
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Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
| prpF |
Gene: Ping_1866: Aconitase accessory protein PrpF |
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Gene: PE36_01040: Aconitase accessory protein PrpF |
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Aconitase accessory protein PrpF |
| prpE |
Gene: Ping_1865: Propionyl-CoA synthetase (EC 6.2.1.17) |
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Propionyl-CoA synthetase (EC 6.2.1.17) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |