Regulog PrpR - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Methylcitrate utilization |
| Effector: | 2-methylcitrate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By trascription factor - PrpR
- By TF family - GntR/Others
- By effector - 2-methylcitrate
- By pathway - Methylcitrate utilization
| Genome | Genes | Operons |
|---|---|---|
| Pseudomonas aeruginosa PAO1 | 6 | 1 |
| Pseudomonas entomophila L48 | 6 | 1 |
| Pseudomonas putida KT2440 | 6 | 1 |
| Pseudomonas syringae pv. tomato str. DC3000 | 2 | 1 |
| Pseudomonas fluorescens Pf-5 | 4 | 2 |
| Pseudomonas mendocina ymp | 5 | 1 |
| Pseudomonas stutzeri A1501 | 5 | 1 |
| Azotobacter vinelandii AvOP | 5 | 1 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| prpR |
*
Pseudomonas aeruginosa PAO1 Site: position = -33 score = 4.68522 sequence = ATTGTCGACACA Site: position = -96 score = 5.82454 sequence = ATTGTCGACAAT Gene: PA0797: Propionate catabolism transcriptional regulator, GntR family |
*
Pseudomonas entomophila L48 Site: position = -13 score = 4.81894 sequence = GGTGTCGACAAT Site: position = -86 score = 5.82454 sequence = ATTGTCGACAAT Gene: PSEEN1901: Propionate catabolism transcriptional regulator, GntR family |
*
Pseudomonas putida KT2440 Site: position = -12 score = 4.81894 sequence = GGTGTCGACAAT Site: position = -85 score = 5.82454 sequence = ATTGTCGACAAT Gene: PP2333: Propionate catabolism transcriptional regulator, GntR family |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -31 score = 4.81894 sequence = GGTGTCGACAAT Site: position = -104 score = 5.29278 sequence = ATTGTCGACAGT Gene: PSPTO2286: Propionate catabolism transcriptional regulator, GntR family |
*
Pseudomonas fluorescens Pf-5 Site: position = -12 score = 4.81894 sequence = GGTGTCGACAAT Site: position = -85 score = 5.82454 sequence = ATTGTCGACAAT Gene: PFL_1860: Propionate catabolism transcriptional regulator, GntR family |
*
Pseudomonas mendocina ymp Site: position = -13 score = 4.81894 sequence = GGTGTCGACAAT Site: position = -87 score = 5.82454 sequence = ATTGTCGACAAT Gene: Pmen_2079: Propionate catabolism transcriptional regulator, GntR family |
*
Pseudomonas stutzeri A1501 Site: position = -13 score = 5.82454 sequence = ATTGTCGACAAT Site: position = -88 score = 4.81894 sequence = GGTGTCGACAAT Gene: PST_2033: Propionate catabolism transcriptional regulator, GntR family |
*
Azotobacter vinelandii AvOP Site: position = -12 score = 5.82454 sequence = ATTGTCGACAAT Site: position = -85 score = 5.82454 sequence = ATTGTCGACAAT Gene: Avin_23200: Propionate catabolism transcriptional regulator, GntR family |
Propionate catabolism transcriptional regulator, GntR family |
| prpB |
Gene: PA0796: Methylisocitrate lyase (EC 4.1.3.30) |
Gene: PSEEN1902: Methylisocitrate lyase (EC 4.1.3.30) |
Gene: PP2334: Methylisocitrate lyase (EC 4.1.3.30) |
Gene: PSPTO2287: Methylisocitrate lyase (EC 4.1.3.30) |
Gene: PFL_1861: Methylisocitrate lyase (EC 4.1.3.30) |
Gene: Pmen_2080: Methylisocitrate lyase (EC 4.1.3.30) |
Gene: PST_2034: Methylisocitrate lyase (EC 4.1.3.30) |
Gene: Avin_23210: Methylisocitrate lyase (EC 4.1.3.30) |
Methylisocitrate lyase (EC 4.1.3.30) |
| prpC |
Gene: PA0795: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: PSEEN1903: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: PP2335: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: PSPTO2288: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: PFL_1862: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: Pmen_2081: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: PST_2035: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: Avin_23220: 2-methylcitrate synthase (EC 2.3.3.5) |
2-methylcitrate synthase (EC 2.3.3.5) |
| acnD |
Gene: PA0794: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
Gene: PSEEN1905: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
Gene: PP2336: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
Gene: PSPTO2289: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
Gene: PFL_1863: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
Gene: Pmen_2082: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
Gene: PST_2036: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
Gene: Avin_23230: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
| prpF |
Gene: PA0793: Aconitase accessory protein PrpF |
Gene: PSEEN1906: Aconitase accessory protein PrpF |
Gene: PP2337: Aconitase accessory protein PrpF |
Gene: PSPTO2290: Aconitase accessory protein PrpF |
Gene: PFL_1864: Aconitase accessory protein PrpF |
Gene: Pmen_2083: Aconitase accessory protein PrpF |
Gene: PST_2037: Aconitase accessory protein PrpF |
Gene: Avin_23250: Aconitase accessory protein PrpF |
Aconitase accessory protein PrpF |
| prpD |
Gene: PA0792: 2-methylcitrate dehydratase (EC 4.2.1.79) |
Gene: PSEEN1907: 2-methylcitrate dehydratase (EC 4.2.1.79) |
Gene: PP2338: 2-methylcitrate dehydratase (EC 4.2.1.79) |
|
Gene: PFL_1865: 2-methylcitrate dehydratase (EC 4.2.1.79) |
|
|
|
2-methylcitrate dehydratase (EC 4.2.1.79) |
| CRON 2. | |||||||||
| acnB |
Gene: PA1787: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) |
Gene: PSEEN1908: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) |
Gene: PP2339: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) |
Gene: PSPTO3752: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) |
*
Pseudomonas fluorescens Pf-5 Site: position = -113 score = 4.40059 sequence = ATTGTCGGTAAT Gene: PFL_2633: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) |
Gene: Pmen_2578: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) |
Gene: PST_2046: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) |
Gene: Avin_23470: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) |
Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |