Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PrpR - Oceanospirillales/Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Methylcitrate utilization
Effector: 2-methylcitrate
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 25 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Hahella chejuensis KCTC 2396 4 1
Marinobacter aqueolei 7 2
Marinobacter sp. ELB17 3 1
Oceanobacter sp. RED65 5 1
Oceanospirillum sp. MED92 5 2
Marinomonas sp. MWYL1 4 1
Saccharophagus degradans 2-40
Teredinibacter turnerae T7901
Cellvibrio japonicus Ueda107
Chromohalobacter salexigens DSM 3043 5 2
Reinekea sp. MED297 6 2
Alcanivorax borkumensis SK2 6 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
prpE
 
Hahella chejuensis KCTC 2396
*
Marinobacter aqueolei

Site:
position = -52
score = 4.25777
sequence = GTTGTCGATAAC

Gene: Maqu_1730: Propionyl-CoA synthetase (EC 6.2.1.17)
 
Marinobacter sp. ELB17

Gene: MELB17_14883: Propionyl-CoA synthetase (EC 6.2.1.17)
 
Oceanobacter sp. RED65
*2
Oceanospirillum sp. MED92

Site:
position = -71
score = 4.58659
sequence = ACTGTCTACAAT

Site:
position = -222
score = 5.82454
sequence = ATTGTCGACAAT

Gene: MED92_10499: Propionyl-CoA synthetase (EC 6.2.1.17)

Gene: MED92_06178: Propionyl-CoA synthetase (EC 6.2.1.17)
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
*
Reinekea sp. MED297

Site:
position = -93
score = 4.91067
sequence = ATTGTTAACAAT

Site:
position = -31
score = 4.91067
sequence = ATTGTTAACAAT

Gene: MED297_04744: Propionyl-CoA synthetase (EC 6.2.1.17)
 
Alcanivorax borkumensis SK2

Gene: ABO_1731: Propionyl-CoA synthetase (EC 6.2.1.17)
Propionyl-CoA synthetase (EC 6.2.1.17)
 
CRON 2.
prpR
*
Hahella chejuensis KCTC 2396

Site:
position = -74
score = 4.82561
sequence = ATTGTTTACAAT

Site:
position = -12
score = 4.67165
sequence = ATTGTAAACAAT

Gene: HCH_02709: Propionate catabolism transcriptional regulator, GntR family
*
Marinobacter aqueolei

Site:
position = -66
score = 5.36427
sequence = ATTGTTGACAAT

Site:
position = -14
score = 4.21805
sequence = ATTGTTAACAAA

Gene: Maqu_1667: Propionate catabolism transcriptional regulator, GntR family
*
Marinobacter sp. ELB17

Site:
position = -65
score = 5.36427
sequence = ATTGTTGACAAT

Site:
position = -14
score = 4.21805
sequence = ATTGTTAACAAA

Gene: MELB17_14501: Propionate catabolism transcriptional regulator, GntR family
*
Oceanobacter sp. RED65

Site:
position = -16
score = 5.12525
sequence = ATTGTAGACAAT

Site:
position = -78
score = 4.58659
sequence = TTTGTCTACAAT

Gene: RED65_03680: Propionate catabolism transcriptional regulator, GntR family
*
Oceanospirillum sp. MED92

Site:
position = -93
score = 4.11965
sequence = TGTGTTGACAAT

Site:
position = -21
score = 5.82454
sequence = ATTGTCGACAAT

Gene: MED92_04442: Propionate catabolism transcriptional regulator, GntR family
*
Marinomonas sp. MWYL1

Site:
position = -30
score = 5.37094
sequence = ATTGTCAACAAT

Site:
position = -268
score = 4.68522
sequence = ATTGTCGACACA

Site:
position = -83
score = 5.82454
sequence = ATTGTCGACAAT

Gene: Mmwyl1_0926: Propionate catabolism transcriptional regulator, GntR family
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
*
Chromohalobacter salexigens DSM 3043

Site:
position = -132
score = 5.82454
sequence = ATTGTCGACAAT

Site:
position = -15
score = 5.82454
sequence = ATTGTCGACAAT

Gene: Csal_2422: Propionate catabolism transcriptional regulator, GntR family
*
Reinekea sp. MED297

Site:
position = -77
score = 4.91067
sequence = ATTGTTAACAAT

Site:
position = -14
score = 4.21805
sequence = ATTGTTAACAAA

Gene: MED297_14280: Propionate catabolism transcriptional regulator, GntR family
*
Alcanivorax borkumensis SK2

Site:
position = -86
score = 5.37094
sequence = ATTGTCAACAAT

Site:
position = -23
score = 5.37094
sequence = ATTGTCAACAAT

Gene: ABO_1434: Propionate catabolism transcriptional regulator, GntR family
Propionate catabolism transcriptional regulator, GntR family
prpB
 
Hahella chejuensis KCTC 2396

Gene: HCH_02710: Methylisocitrate lyase (EC 4.1.3.30)
 
Marinobacter aqueolei

Gene: Maqu_1666: Methylisocitrate lyase (EC 4.1.3.30)
 
Marinobacter sp. ELB17

Gene: MELB17_14496: Methylisocitrate lyase (EC 4.1.3.30)
 
Oceanobacter sp. RED65

Gene: RED65_03675: Methylisocitrate lyase (EC 4.1.3.30)
 
Oceanospirillum sp. MED92

Gene: MED92_04447: Methylisocitrate lyase (EC 4.1.3.30)
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_0925: Methylisocitrate lyase (EC 4.1.3.30)
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_2421: Methylisocitrate lyase (EC 4.1.3.30)
 
Reinekea sp. MED297

Gene: MED297_14285: Methylisocitrate lyase (EC 4.1.3.30)
 
Alcanivorax borkumensis SK2

Gene: ABO_1433: Methylisocitrate lyase (EC 4.1.3.30)
Methylisocitrate lyase (EC 4.1.3.30)
prpC
 
Hahella chejuensis KCTC 2396

Gene: HCH_02711: 2-methylcitrate synthase (EC 2.3.3.5)
 
Marinobacter aqueolei

Gene: Maqu_1665: 2-methylcitrate synthase (EC 2.3.3.5)
 
Marinobacter sp. ELB17

Gene: MELB17_14491: 2-methylcitrate synthase (EC 2.3.3.5)
 
Oceanobacter sp. RED65

Gene: RED65_03670: 2-methylcitrate synthase (EC 2.3.3.5)
 
Oceanospirillum sp. MED92

Gene: MED92_04452: 2-methylcitrate synthase (EC 2.3.3.5)
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_0924: 2-methylcitrate synthase (EC 2.3.3.5)
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_2420: 2-methylcitrate synthase (EC 2.3.3.5)
 
Reinekea sp. MED297

Gene: MED297_14290: 2-methylcitrate synthase (EC 2.3.3.5)
 
Alcanivorax borkumensis SK2

Gene: ABO_1432: 2-methylcitrate synthase (EC 2.3.3.5)
2-methylcitrate synthase (EC 2.3.3.5)
acnD
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei

Gene: Maqu_1664: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Marinobacter sp. ELB17

Gene: MELB17_14486: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Oceanobacter sp. RED65

Gene: RED65_03665: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Oceanospirillum sp. MED92

Gene: MED92_04457: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297

Gene: MED297_14295: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Alcanivorax borkumensis SK2

Gene: ABO_1431: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
prpF
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei

Gene: Maqu_1663: Aconitase accessory protein PrpF
 
Marinobacter sp. ELB17

Gene: MELB17_14481: Aconitase accessory protein PrpF
 
Oceanobacter sp. RED65

Gene: RED65_03660: Aconitase accessory protein PrpF
 
Oceanospirillum sp. MED92

Gene: MED92_04462: Aconitase accessory protein PrpF
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297

Gene: MED297_14300: Aconitase accessory protein PrpF
 
Alcanivorax borkumensis SK2

Gene: ABO_1430: Aconitase accessory protein PrpF
Aconitase accessory protein PrpF
prpD
 
Hahella chejuensis KCTC 2396

Gene: HCH_02712: 2-methylcitrate dehydratase (EC 4.2.1.79)
 
Marinobacter aqueolei

Gene: Maqu_1662: 2-methylcitrate dehydratase (EC 4.2.1.79)
 
Marinobacter sp. ELB17

Gene: MELB17_14471: 2-methylcitrate dehydratase (EC 4.2.1.79)
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_0923: 2-methylcitrate dehydratase (EC 4.2.1.79)
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_2419: 2-methylcitrate dehydratase (EC 4.2.1.79)
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2

Gene: ABO_1429: 2-methylcitrate dehydratase (EC 4.2.1.79)
2-methylcitrate dehydratase (EC 4.2.1.79)
 
CRON 3.
acnB
 
Hahella chejuensis KCTC 2396

Gene: HCH_02149: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
 
Marinobacter aqueolei

Gene: Maqu_1859: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
 
Marinobacter sp. ELB17

Gene: MELB17_08756: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
 
Oceanobacter sp. RED65

Gene: RED65_10474: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
 
Oceanospirillum sp. MED92

Gene: MED92_08996: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_2097: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
 
Saccharophagus degradans 2-40

Gene: Sde_1893: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
 
Teredinibacter turnerae T7901

Gene: TERTU_1899: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
 
Cellvibrio japonicus Ueda107

Gene: CJA_2001: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
*
Chromohalobacter salexigens DSM 3043

Site:
position = -143
score = 5.29278
sequence = ATTGTCGACAGT

Gene: Csal_2058: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
 
Reinekea sp. MED297

Gene: MED297_17597: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
 
Alcanivorax borkumensis SK2

Gene: ABO_1201: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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