Regulog AgaR - Vibrionales

Properties
Regulator type:	Transcription factor
Regulator family:	DeoR
Regulation mode:	repressor
Biological process:	N-acetylgalactosamine utilization
Effector:	N-acetylgalactosamine-6-phosphate; Galactosamine-6-phosphate
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 11 sites [see more]

Member of regulog collections

By taxonomy - Vibrionales
By trascription factor - AgaR
By TF family - DeoR
By effector - N-acetylgalactosamine-6-phosphate
By effector - Galactosamine-6-phosphate
By pathway - N-acetylgalactosamine utilization

Statistics of regulated genes
Genome	Genes	Operons
Vibrio cholerae O1 biovar eltor str. N16961
Vibrio vulnificus CMCP6	9	1
Vibrio harveyi ATCC BAA-1116
Vibrio parahaemolyticus RIMD 2210633
Vibrio shilonii AK1
Vibrio splendidus LGP32
Vibrio fischeri ES114	9	2
Vibrio salmonicida LFI1238
Vibrio angustum S14	9	1
Photobacterium profundum SS9	11	3

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
agaR	Vibrio cholerae O1 biovar eltor str. N16961	* Vibrio vulnificus CMCP6 Site: position = -144 score = 7.41002 sequence = GAAAGG-(16)-CGAAAG Site: position = -47 score = 7.01802 sequence = GAAAGC-(14)-TGAAAG Gene: VV21025: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	* Vibrio angustum S14 Site: position = -146 score = 7.61052 sequence = GAAAGA-(16)-CGAAAG Site: position = -49 score = 7.25974 sequence = GAAACA-(15)-TGAAAT Gene: VAS14_15564: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family	* Photobacterium profundum SS9 Site: position = -49 score = 7.37562 sequence = GAAACA-(14)-CGAAAT Site: position = -146 score = 7.41002 sequence = GAAAGG-(16)-CGAAAG Gene: PBPRB1036: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family	Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family
agaZ	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV21024: Tagatose-6-phosphate kinase (EC 2.7.1.144)	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114 Gene: VF_A1005: Tagatose-6-phosphate kinase (EC 2.7.1.144)	Vibrio salmonicida LFI1238	Vibrio angustum S14 Gene: VAS14_15569: Tagatose-6-phosphate kinase (EC 2.7.1.144)	2 Photobacterium profundum SS9 Gene: PBPRB0141: Tagatose-6-phosphate kinase (EC 2.7.1.144) Gene: PBPRB1037: Tagatose-6-phosphate kinase (EC 2.7.1.144)	Tagatose-6-phosphate kinase (EC 2.7.1.144)
agaS	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV21023: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114 Gene: VF_A1004: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	Vibrio salmonicida LFI1238	Vibrio angustum S14 Gene: VAS14_15574: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	Photobacterium profundum SS9 Gene: PBPRB0142: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	Galactosamine-6-phosphate isomerase (EC 5.3.1.-)
agaV	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV21022: PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14 Gene: VAS14_15579: PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)	Photobacterium profundum SS9 Gene: PBPRB1038: PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)	PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)
agaW	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV21021: PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69)	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14 Gene: VAS14_15584: PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69)	Photobacterium profundum SS9 Gene: PBPRB1039: PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69)	PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69)
agaE	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV21020: PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69)	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14 Gene: VAS14_15589: PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69)	Photobacterium profundum SS9 Gene: PBPRB1040: PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69)	PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69)
agaF	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV21019: PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69)	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14 Gene: VAS14_15594: PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69)	Photobacterium profundum SS9 Gene: PBPRB1041: PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69)	PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69)
agaA	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV21018: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114 Gene: VF_A0999: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)	Vibrio salmonicida LFI1238	Vibrio angustum S14 Gene: VAS14_15599: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)	2 Photobacterium profundum SS9 Gene: PBPRB1042: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) Gene: PBPRB0147: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)	N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)
agaY	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV21017: Tagatose-1,6-bisphosphate aldolase AgaY (EC 4.1.2.-)	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	* Vibrio fischeri ES114 Site: position = -180 score = 6.4946 sequence = AAAACA-(15)-CGAAAG Gene: VF_A0989: Tagatose-1,6-bisphosphate aldolase AgaY (EC 4.1.2.-)	Vibrio salmonicida LFI1238	Vibrio angustum S14 Gene: VAS14_15604: Tagatose-1,6-bisphosphate aldolase AgaY (EC 4.1.2.-)	2 Photobacterium profundum SS9* Gene: PBPRB1043: Tagatose-1,6-bisphosphate aldolase AgaY (EC 4.1.2.-) Site: position = -201 score = 6.59032 sequence = GAAAGG-(14)-AGAAAG Gene: PBPRB0157: Tagatose-1,6-bisphosphate aldolase AgaY (EC 4.1.2.-)	Tagatose-1,6-bisphosphate aldolase AgaY (EC 4.1.2.-)
agaR2	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	* Vibrio fischeri ES114 Site: position = -60 score = 6.41312 sequence = GTAAGG-(16)-CGAAAG Gene: VF_A1006: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family	Vibrio salmonicida LFI1238	Vibrio angustum S14	* Photobacterium profundum SS9 Site: position = -39 score = 6.63995 sequence = GAAAGA-(14)-CGTAAG Site: position = -250 score = 7.29414 sequence = GAAAGG-(16)-TGAAAG Gene: PBPRB0140: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family	Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family
agaV-II	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114 Gene: VF_A1003: PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRB0143: PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)	PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)
agaW-II	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114 Gene: VF_A1002: PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69)	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRB0144: PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69)	PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69)
agaE-II	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114 Gene: VF_A1001: PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69)	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRB0145: PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69)	PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69)
agaF-II	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114 Gene: VF_A1000: PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69)	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRB0146: PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69)	PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog AgaR - Vibrionales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --