Regulog AgaR - Vibrionales
| Regulator type: | Transcription factor |
| Regulator family: | DeoR |
| Regulation mode: | repressor |
| Biological process: | N-acetylgalactosamine utilization |
| Effector: | N-acetylgalactosamine-6-phosphate; Galactosamine-6-phosphate |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Vibrionales
- By trascription factor - AgaR
- By TF family - DeoR
- By effector - N-acetylgalactosamine-6-phosphate
- By effector - Galactosamine-6-phosphate
- By pathway - N-acetylgalactosamine utilization
| Genome | Genes | Operons |
|---|---|---|
| Vibrio cholerae O1 biovar eltor str. N16961 | ||
| Vibrio vulnificus CMCP6 | 9 | 1 |
| Vibrio harveyi ATCC BAA-1116 | ||
| Vibrio parahaemolyticus RIMD 2210633 | ||
| Vibrio shilonii AK1 | ||
| Vibrio splendidus LGP32 | ||
| Vibrio fischeri ES114 | 9 | 2 |
| Vibrio salmonicida LFI1238 | ||
| Vibrio angustum S14 | 9 | 1 |
| Photobacterium profundum SS9 | 11 | 3 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| agaR |
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Vibrio vulnificus CMCP6 Site: position = -144 score = 7.41002 sequence = GAAAGG-(16)-CGAAAG Site: position = -47 score = 7.01802 sequence = GAAAGC-(14)-TGAAAG Gene: VV21025: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family |
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Vibrio angustum S14 Site: position = -146 score = 7.61052 sequence = GAAAGA-(16)-CGAAAG Site: position = -49 score = 7.25974 sequence = GAAACA-(15)-TGAAAT Gene: VAS14_15564: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family |
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Photobacterium profundum SS9 Site: position = -49 score = 7.37562 sequence = GAAACA-(14)-CGAAAT Site: position = -146 score = 7.41002 sequence = GAAAGG-(16)-CGAAAG Gene: PBPRB1036: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family |
Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family |
| agaZ |
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Gene: VV21024: Tagatose-6-phosphate kinase (EC 2.7.1.144) |
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Gene: VF_A1005: Tagatose-6-phosphate kinase (EC 2.7.1.144) |
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Gene: VAS14_15569: Tagatose-6-phosphate kinase (EC 2.7.1.144) |
2
Photobacterium profundum SS9 Gene: PBPRB0141: Tagatose-6-phosphate kinase (EC 2.7.1.144) Gene: PBPRB1037: Tagatose-6-phosphate kinase (EC 2.7.1.144) |
Tagatose-6-phosphate kinase (EC 2.7.1.144) |
| agaS |
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Gene: VV21023: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
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Gene: VF_A1004: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
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Gene: VAS14_15574: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
Gene: PBPRB0142: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
| agaV |
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Gene: VV21022: PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69) |
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Gene: VAS14_15579: PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69) |
Gene: PBPRB1038: PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69) |
PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69) |
| agaW |
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Gene: VV21021: PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69) |
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Gene: VAS14_15584: PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69) |
Gene: PBPRB1039: PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69) |
PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69) |
| agaE |
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Gene: VV21020: PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69) |
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Gene: VAS14_15589: PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69) |
Gene: PBPRB1040: PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69) |
PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69) |
| agaF |
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Gene: VV21019: PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69) |
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Gene: VAS14_15594: PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69) |
Gene: PBPRB1041: PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69) |
PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69) |
| agaA |
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Gene: VV21018: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Gene: VF_A0999: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Gene: VAS14_15599: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
2
Photobacterium profundum SS9 Gene: PBPRB1042: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) Gene: PBPRB0147: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
| agaY |
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Gene: VV21017: Tagatose-1,6-bisphosphate aldolase AgaY (EC 4.1.2.-) |
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Vibrio fischeri ES114 Site: position = -180 score = 6.4946 sequence = AAAACA-(15)-CGAAAG Gene: VF_A0989: Tagatose-1,6-bisphosphate aldolase AgaY (EC 4.1.2.-) |
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Gene: VAS14_15604: Tagatose-1,6-bisphosphate aldolase AgaY (EC 4.1.2.-) |
*2
Photobacterium profundum SS9 Gene: PBPRB1043: Tagatose-1,6-bisphosphate aldolase AgaY (EC 4.1.2.-) Site: position = -201 score = 6.59032 sequence = GAAAGG-(14)-AGAAAG Gene: PBPRB0157: Tagatose-1,6-bisphosphate aldolase AgaY (EC 4.1.2.-) |
Tagatose-1,6-bisphosphate aldolase AgaY (EC 4.1.2.-) |
| agaR2 |
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Vibrio fischeri ES114 Site: position = -60 score = 6.41312 sequence = GTAAGG-(16)-CGAAAG Gene: VF_A1006: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family |
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Photobacterium profundum SS9 Site: position = -39 score = 6.63995 sequence = GAAAGA-(14)-CGTAAG Site: position = -250 score = 7.29414 sequence = GAAAGG-(16)-TGAAAG Gene: PBPRB0140: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family |
Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family |
| agaV-II |
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Gene: VF_A1003: PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69) |
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Gene: PBPRB0143: PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69) |
PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69) |
| agaW-II |
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Gene: VF_A1002: PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69) |
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Gene: PBPRB0144: PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69) |
PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69) |
| agaE-II |
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Gene: VF_A1001: PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69) |
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Gene: PBPRB0145: PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69) |
PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69) |
| agaF-II |
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Gene: VF_A1000: PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69) |
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Gene: PBPRB0146: PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69) |
PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |