Regulog mini-ykkC - Vibrionales
| Regulator type: | RNA regulatory element |
| Name: | mini-ykkC |
| RFAM: | RF01068 |
| Regulation mode: | |
| Biological process: | Multidrug resistance |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Vibrionales
- By RNA motif - mini-ykkC
- By pathway - Multidrug resistance
| Genome | Genes | Operons |
|---|---|---|
| Vibrio cholerae O1 biovar eltor str. N16961 | 1 | 1 |
| Vibrio vulnificus CMCP6 | ||
| Vibrio harveyi ATCC BAA-1116 | 2 | 1 |
| Vibrio parahaemolyticus RIMD 2210633 | 1 | 1 |
| Vibrio shilonii AK1 | ||
| Vibrio splendidus LGP32 | ||
| Vibrio fischeri ES114 | ||
| Vibrio salmonicida LFI1238 | ||
| Vibrio angustum S14 | ||
| Photobacterium profundum SS9 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| ykkC |
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Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -63 score = 47.84 sequence = AGTGAGGACGACCTC... Gene: VC1393: Quaternary ammonium compound-resistance protein sugE |
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*2
Vibrio harveyi ATCC BAA-1116 Site: position = -66 score = 48.47 sequence = GAAGTGAGGACGACC... Gene: VIBHAR_05880: Quaternary ammonium compound-resistance protein sugE Gene: VIBHAR_05879: Quaternary ammonium compound-resistance protein sugE |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -66 score = 48.97 sequence = AGTGAGGACGACCTC... Gene: VPA0756: Quaternary ammonium compound-resistance protein sugE |
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Quaternary ammonium compound-resistance protein sugE |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |