Collection of regulogs for mini-ykkC (RF01068) RNA regulatory element
The mini-ykkC RNA motif is a putative regulatory element found upstream of the ykkC genes and that is highly conserved in various species of Proteobacteria [17621584]. This motif was named mini-ykkC because it appears to be a cis-regulator of a set of genes similar to that controlled by the ykkC (RF00442) motif. The mini-ykkC RNA motif is a small RNA element that consists of two conserved stem-loops, and which is structurally distinct from the ykkC RNA. Natural ligands of both ykkC and mini-ykkC cis-regulatory RNA motifs are unknown.
| Phylum | Regulog | RNA regulons (studied genomes) | RNA sites |
|---|---|---|---|
| Cyanobacteria | mini-ykkC - Cyanobacteria | 1 (14) | 1 |
| Proteobacteria | mini-ykkC - Burkholderia | 8 (8) | 9 |
| Proteobacteria | mini-ykkC - Caulobacterales | 4 (4) | 4 |
| Proteobacteria | mini-ykkC - Enterobacteriales | 10 (12) | 10 |
| Proteobacteria | mini-ykkC - Pseudomonadaceae | 7 (8) | 8 |
| Proteobacteria | mini-ykkC - Ralstonia | 2 (6) | 2 |
| Proteobacteria | mini-ykkC - Rhizobiales | 9 (15) | 12 |
| Proteobacteria | mini-ykkC - Rhodobacterales | 9 (15) | 10 |
| Proteobacteria | mini-ykkC - Shewanellaceae | 7 (16) | 7 |
| Proteobacteria | mini-ykkC - Vibrionales | 3 (10) | 3 |
| Proteobacteria/delta | mini-ykkC - Desulfovibrionales | 1 (10) | 1 |