Regulog mini-ykkC - Rhizobiales

Properties
Regulator type:	RNA regulatory element
Name:	mini-ykkC
RFAM:	RF01068
Regulation mode:
Biological process:	Multidrug resistance
Effector:
Phylum:	Proteobacteria

Member of regulog collections

By taxonomy - Rhizobiales
By RNA motif - mini-ykkC
By pathway - Multidrug resistance

Statistics of regulated genes
Genome	Genes	Operons
Sinorhizobium meliloti 1021
Rhizobium sp. NGR234	1	1
Rhizobium leguminosarum bv. viciae 3841	5	2
Rhizobium etli CFN 42	5	2
Agrobacterium tumefaciens str. C58 (Cereon)
Mesorhizobium sp. BNC1	1	1
Mesorhizobium loti MAFF303099	1	1
Brucella melitensis 16M
Bartonella quintana str. Toulouse
Rhodopseudomonas palustris CGA009	5	2
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Nitrobacter winogradskyi Nb-255	1	1
Azorhizobium caulinodans ORS 571	4	1
Xanthobacter autotrophicus Py2	4	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
amt1	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -74 score = 37.06 sequence = GACCGGGACGGCCCG... Gene: pRL90291: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	* Rhizobium etli CFN 42 Site: position = -70 score = 34.69 sequence = CCGACCGGGACGGCC... Gene: RHE_PE00120: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	* Rhodopseudomonas palustris CGA009 Site: position = -73 score = 35.98 sequence = CCGGCCGGGACGACC... Gene: RPA1407: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	* Azorhizobium caulinodans ORS 571 Site: position = -76 score = 36.44 sequence = GACCGGGACGACCCG... Gene: AZC_4400: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	* Xanthobacter autotrophicus Py2 Site: position = -79 score = 36.69 sequence = CAGGCCGGGACGACC... Gene: Xaut_1224: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
amt2	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL90292: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Rhizobium etli CFN 42 Gene: RHE_PE00119: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA1406: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_4401: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Xanthobacter autotrophicus Py2 Gene: Xaut_1223: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
ucaA	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL90293: Urea carboxylase (EC 6.3.4.6)	Rhizobium etli CFN 42 Gene: RHE_PE00118: Urea carboxylase (EC 6.3.4.6)	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA1405: Urea carboxylase (EC 6.3.4.6)	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_4402: Urea carboxylase (EC 6.3.4.6)	Xanthobacter autotrophicus Py2 Gene: Xaut_1222: Urea carboxylase (EC 6.3.4.6)	Urea carboxylase (EC 6.3.4.6)
ucaB	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234 Gene: NGR_b03920: Allophanate hydrolase (EC 3.5.1.54)	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL90294: Allophanate hydrolase (EC 3.5.1.54)	Rhizobium etli CFN 42 Gene: RHE_PE00117: Allophanate hydrolase (EC 3.5.1.54)	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099 Gene: mlr7070: Allophanate hydrolase (EC 3.5.1.54)	Brucella melitensis 16M	Bartonella quintana str. Toulouse	2 Rhodopseudomonas palustris CGA009 Gene: RPA1466: Allophanate hydrolase (EC 3.5.1.54) Gene: RPA1404: Allophanate hydrolase (EC 3.5.1.54)	Bradyrhizobium japonicum USDA 110 Gene: bll1044: Allophanate hydrolase (EC 3.5.1.54)	Bradyrhizobium sp. BTAi1 Gene: BBta_0724: Allophanate hydrolase (EC 3.5.1.54)	Nitrobacter winogradskyi Nb-255	2 Azorhizobium caulinodans ORS 571 Gene: AZC_1523: Allophanate hydrolase (EC 3.5.1.54) Gene: AZC_4403: Allophanate hydrolase (EC 3.5.1.54) # truncated	2 Xanthobacter autotrophicus Py2 Gene: Xaut_4705: Allophanate hydrolase (EC 3.5.1.54) Gene: Xaut_1221: Allophanate hydrolase (EC 3.5.1.54) # truncated	Allophanate hydrolase (EC 3.5.1.54)

CRON 2.
ykkc	Sinorhizobium meliloti 1021 Gene: SMc01278: Quaternary ammonium compound-resistance protein sugE	* Rhizobium sp. NGR234 Site: position = -75 score = 19.17 sequence = GATGCAGACGGCTGC... Gene: NGR_c12200: Quaternary ammonium compound-resistance protein sugE	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -75 score = 29.48 sequence = ATCGCAGACGACTGC... Gene: RL2561: Quaternary ammonium compound-resistance protein sugE	* Rhizobium etli CFN 42 Site: position = -74 score = 22.55 sequence = ATCGCAGACGACTGC... Gene: RHE_CH02230: Quaternary ammonium compound-resistance protein sugE	Agrobacterium tumefaciens str. C58 (Cereon)	* Mesorhizobium sp. BNC1 Site: position = -66 score = 34.03 sequence = TGCAGGGACGGCCTT... Gene: Meso_0982: Quaternary ammonium compound-resistance protein sugE	* Mesorhizobium loti MAFF303099 Site: position = -112 score = 44.44 sequence = CGCGGGGACGACCCC... Gene: mlr4864: Quaternary ammonium compound-resistance protein sugE	Brucella melitensis 16M	Bartonella quintana str. Toulouse	* Rhodopseudomonas palustris CGA009 Site: position = -132 score = 35.79 sequence = ATCGAGGACGACCTC... Gene: RPA2284: Quaternary ammonium compound-resistance protein sugE	Bradyrhizobium japonicum USDA 110 Gene: bll4044: Quaternary ammonium compound-resistance protein sugE	Bradyrhizobium sp. BTAi1	2 Nitrobacter winogradskyi Nb-255* Gene: Nwi_2320: Quaternary ammonium compound-resistance protein sugE Site: position = -55 score = 38.06 sequence = CGGAAGGACGACCTT... Gene: Nwi_2028: Quaternary ammonium compound-resistance protein sugE	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Quaternary ammonium compound-resistance protein sugE

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog mini-ykkC - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --