Regulog mini-ykkC - Rhizobiales
| Regulator type: | RNA regulatory element |
| Name: | mini-ykkC |
| RFAM: | RF01068 |
| Regulation mode: | |
| Biological process: | Multidrug resistance |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Rhizobiales
- By RNA motif - mini-ykkC
- By pathway - Multidrug resistance
| Genome | Genes | Operons |
|---|---|---|
| Sinorhizobium meliloti 1021 | ||
| Rhizobium sp. NGR234 | 1 | 1 |
| Rhizobium leguminosarum bv. viciae 3841 | 5 | 2 |
| Rhizobium etli CFN 42 | 5 | 2 |
| Agrobacterium tumefaciens str. C58 (Cereon) | ||
| Mesorhizobium sp. BNC1 | 1 | 1 |
| Mesorhizobium loti MAFF303099 | 1 | 1 |
| Brucella melitensis 16M | ||
| Bartonella quintana str. Toulouse | ||
| Rhodopseudomonas palustris CGA009 | 5 | 2 |
| Bradyrhizobium japonicum USDA 110 | ||
| Bradyrhizobium sp. BTAi1 | ||
| Nitrobacter winogradskyi Nb-255 | 1 | 1 |
| Azorhizobium caulinodans ORS 571 | 4 | 1 |
| Xanthobacter autotrophicus Py2 | 4 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| amt1 |
|
|
*
Rhizobium leguminosarum bv. viciae 3841 Site: position = -74 score = 37.06 sequence = GACCGGGACGGCCCG... Gene: pRL90291: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
*
Rhizobium etli CFN 42 Site: position = -70 score = 34.69 sequence = CCGACCGGGACGGCC... Gene: RHE_PE00120: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
|
|
|
|
|
*
Rhodopseudomonas palustris CGA009 Site: position = -73 score = 35.98 sequence = CCGGCCGGGACGACC... Gene: RPA1407: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
|
|
|
*
Azorhizobium caulinodans ORS 571 Site: position = -76 score = 36.44 sequence = GACCGGGACGACCCG... Gene: AZC_4400: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
*
Xanthobacter autotrophicus Py2 Site: position = -79 score = 36.69 sequence = CAGGCCGGGACGACC... Gene: Xaut_1224: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
| amt2 |
|
|
Gene: pRL90292: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
Gene: RHE_PE00119: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
|
|
|
|
|
Gene: RPA1406: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
|
|
|
Gene: AZC_4401: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
Gene: Xaut_1223: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
| ucaA |
|
|
Gene: pRL90293: Urea carboxylase (EC 6.3.4.6) |
Gene: RHE_PE00118: Urea carboxylase (EC 6.3.4.6) |
|
|
|
|
|
Gene: RPA1405: Urea carboxylase (EC 6.3.4.6) |
|
|
|
Gene: AZC_4402: Urea carboxylase (EC 6.3.4.6) |
Gene: Xaut_1222: Urea carboxylase (EC 6.3.4.6) |
Urea carboxylase (EC 6.3.4.6) |
| ucaB |
|
Gene: NGR_b03920: Allophanate hydrolase (EC 3.5.1.54) |
Gene: pRL90294: Allophanate hydrolase (EC 3.5.1.54) |
Gene: RHE_PE00117: Allophanate hydrolase (EC 3.5.1.54) |
|
|
Gene: mlr7070: Allophanate hydrolase (EC 3.5.1.54) |
|
|
2
Rhodopseudomonas palustris CGA009 Gene: RPA1466: Allophanate hydrolase (EC 3.5.1.54) Gene: RPA1404: Allophanate hydrolase (EC 3.5.1.54) |
Gene: bll1044: Allophanate hydrolase (EC 3.5.1.54) |
Gene: BBta_0724: Allophanate hydrolase (EC 3.5.1.54) |
|
2
Azorhizobium caulinodans ORS 571 Gene: AZC_1523: Allophanate hydrolase (EC 3.5.1.54) Gene: AZC_4403: Allophanate hydrolase (EC 3.5.1.54) # truncated |
2
Xanthobacter autotrophicus Py2 Gene: Xaut_4705: Allophanate hydrolase (EC 3.5.1.54) Gene: Xaut_1221: Allophanate hydrolase (EC 3.5.1.54) # truncated |
Allophanate hydrolase (EC 3.5.1.54) |
| CRON 2. | ||||||||||||||||
| ykkc |
Gene: SMc01278: Quaternary ammonium compound-resistance protein sugE |
*
Rhizobium sp. NGR234 Site: position = -75 score = 19.17 sequence = GATGCAGACGGCTGC... Gene: NGR_c12200: Quaternary ammonium compound-resistance protein sugE |
*
Rhizobium leguminosarum bv. viciae 3841 Site: position = -75 score = 29.48 sequence = ATCGCAGACGACTGC... Gene: RL2561: Quaternary ammonium compound-resistance protein sugE |
*
Rhizobium etli CFN 42 Site: position = -74 score = 22.55 sequence = ATCGCAGACGACTGC... Gene: RHE_CH02230: Quaternary ammonium compound-resistance protein sugE |
|
*
Mesorhizobium sp. BNC1 Site: position = -66 score = 34.03 sequence = TGCAGGGACGGCCTT... Gene: Meso_0982: Quaternary ammonium compound-resistance protein sugE |
*
Mesorhizobium loti MAFF303099 Site: position = -112 score = 44.44 sequence = CGCGGGGACGACCCC... Gene: mlr4864: Quaternary ammonium compound-resistance protein sugE |
|
|
*
Rhodopseudomonas palustris CGA009 Site: position = -132 score = 35.79 sequence = ATCGAGGACGACCTC... Gene: RPA2284: Quaternary ammonium compound-resistance protein sugE |
Gene: bll4044: Quaternary ammonium compound-resistance protein sugE |
|
*2
Nitrobacter winogradskyi Nb-255 Gene: Nwi_2320: Quaternary ammonium compound-resistance protein sugE Site: position = -55 score = 38.06 sequence = CGGAAGGACGACCTT... Gene: Nwi_2028: Quaternary ammonium compound-resistance protein sugE |
|
|
Quaternary ammonium compound-resistance protein sugE |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |