Regulog mini-ykkC - Rhodobacterales
| Regulator type: | RNA regulatory element |
| Name: | mini-ykkC |
| RFAM: | RF01068 |
| Regulation mode: | |
| Biological process: | Multidrug resistance |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By RNA motif - mini-ykkC
- By pathway - Multidrug resistance
| Genome | Genes | Operons |
|---|---|---|
| Rhodobacter sphaeroides 2.4.1 | ||
| Paracoccus denitrificans PD1222 | ||
| Jannaschia sp. CCS1 | 1 | 1 |
| Rhodobacterales bacterium HTCC2654 | 1 | 1 |
| Oceanicola granulosus HTCC2516 | ||
| Loktanella vestfoldensis SKA53 | ||
| Oceanicola batsensis HTCC2597 | 2 | 2 |
| Roseovarius nubinhibens ISM | 1 | 1 |
| Roseovarius sp. 217 | 1 | 1 |
| Sulfitobacter sp. EE-36 | 1 | 1 |
| Silicibacter TM1040 | 1 | 1 |
| Silicibacter pomeroyi DSS-3 | ||
| Roseobacter sp. MED193 | ||
| Hyphomonas neptunium ATCC 15444 | 1 | 1 |
| Oceanicaulis alexandrii HTCC2633 | 1 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| COG4125 |
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Gene: Pden_0303: Predicted membrane protein |
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Rhodobacterales bacterium HTCC2654 Site: position = -69 score = 27.43 sequence = CGGTCATCAGGACGA... Gene: RB2654_05847: Predicted membrane protein |
Gene: OG2516_17815: Predicted membrane protein |
|
*2
Oceanicola batsensis HTCC2597 Site: position = -70 score = 25.6 sequence = AGCGAGGACGACCTC... Gene: OB2597_05315: Predicted membrane protein Site: position = -70 score = 27.68 sequence = AGCGAGGACGACCTC... Gene: OB2597_08269: Predicted membrane protein |
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Roseovarius nubinhibens ISM Site: position = -76 score = 26.05 sequence = CATGCGAGGACGACC... Gene: ISM_07275: Predicted membrane protein |
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Roseovarius sp. 217 Site: position = -65 score = 31.07 sequence = AGCGAGGACGACCTC... Gene: ROS217_23162: Predicted membrane protein |
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Sulfitobacter sp. EE-36 Site: position = -67 score = 33.73 sequence = AGTGTGAGGACGACC... Gene: EE36_10819: Predicted membrane protein |
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Silicibacter TM1040 Site: position = -64 score = 15.0 sequence = CGCCGTGCAGGCGTG... Gene: TM1040_1959: Predicted membrane protein |
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Predicted membrane protein |
| CRON 2. | ||||||||||||||||
| ykkC |
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Gene: Pden_3948: Quaternary ammonium compound-resistance protein sugE |
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Jannaschia sp. CCS1 Site: position = -66 score = 41.18 sequence = CCCGCCGGGACGACC... Gene: Jann_1290: Quaternary ammonium compound-resistance protein sugE |
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Hyphomonas neptunium ATCC 15444 Site: position = -62 score = 32.68 sequence = CAGGAGGACGGCCTC... Gene: HNE_2609: Quaternary ammonium compound-resistance protein sugE |
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Oceanicaulis alexandrii HTCC2633 Site: position = -70 score = 41.21 sequence = CCTGAGAGGACGACC... Gene: OA2633_14446: Quaternary ammonium compound-resistance protein sugE |
Quaternary ammonium compound-resistance protein sugE |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |