Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog mini-ykkC - Enterobacteriales

Properties
Regulator type: RNA regulatory element
Name: mini-ykkC
RFAM: RF01068
Regulation mode:
Biological process: Multidrug resistance
Effector:
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Escherichia coli str. K-12 substr. MG1655 1 1
Salmonella typhimurium LT2 1 1
Citrobacter koseri ATCC BAA-895 1 1
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 1 1
Enterobacter sp. 638 1 1
Erwinia amylovora ATCC 49946
Yersinia pestis KIM
Serratia proteamaculans 568 1 1
Erwinia carotovora subsp. atroseptica SCRI1043 1 1
Edwardsiella tarda EIB202 1 1
Proteus mirabilis HI4320 1 1
Photorhabdus luminescens subsp. laumondii TTO1 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ucaA
 
Escherichia coli str. K-12 substr. MG1655
 
Salmonella typhimurium LT2
 
Citrobacter koseri ATCC BAA-895
 
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
 
Enterobacter sp. 638
 
Erwinia amylovora ATCC 49946
 
Yersinia pestis KIM
 
Serratia proteamaculans 568
*
Erwinia carotovora subsp. atroseptica SCRI1043

Site:
position = -66
score = 38.68
sequence = GCGATGGACGACCAT...

Gene: ECA1917: Urea carboxylase (EC 6.3.4.6)
 
Edwardsiella tarda EIB202
 
Proteus mirabilis HI4320
 
Photorhabdus luminescens subsp. laumondii TTO1
Urea carboxylase (EC 6.3.4.6)
 
CRON 2.
ykkC
*
Escherichia coli str. K-12 substr. MG1655

Site:
position = -63
score = 46.34
sequence = TTGCAGGACGACCTG...

Gene: b4148: Quaternary ammonium compound-resistance protein sugE
*
Salmonella typhimurium LT2

Site:
position = -65
score = 39.65
sequence = TTACAGGACGACCTG...

Gene: STM4338: Quaternary ammonium compound-resistance protein sugE
*
Citrobacter koseri ATCC BAA-895

Site:
position = -64
score = 41.87
sequence = CTTTGCAGGACGACC...

Gene: CKO_03683: Quaternary ammonium compound-resistance protein sugE
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Site:
position = -57
score = 41.45
sequence = TTACGGGACGACCCG...

Gene: KPN_04548: Quaternary ammonium compound-resistance protein sugE
*
Enterobacter sp. 638

Site:
position = -73
score = 42.1
sequence = TTGCGGGACGACCTG...

Gene: Ent638_0337: Quaternary ammonium compound-resistance protein sugE
 
Erwinia amylovora ATCC 49946
 
Yersinia pestis KIM

Gene: y0613: Quaternary ammonium compound-resistance protein sugE
*
Serratia proteamaculans 568

Site:
position = -64
score = 41.2
sequence = AAACGGGACGACCTG...

Gene: Spro_0415: Quaternary ammonium compound-resistance protein sugE
 
Erwinia carotovora subsp. atroseptica SCRI1043
*
Edwardsiella tarda EIB202

Site:
position = -79
score = 33.15
sequence = GTGCGGGACGACCCG...

Gene: ETAE_0334: Quaternary ammonium compound-resistance protein sugE
*
Proteus mirabilis HI4320

Site:
position = -69
score = 39.06
sequence = GGCTGGGACGACCCA...

Gene: PMI3584: Quaternary ammonium compound-resistance protein sugE
*
Photorhabdus luminescens subsp. laumondii TTO1

Site:
position = -71
score = 38.77
sequence = TTATCCGGGACGACC...

Gene: plu4129: Quaternary ammonium compound-resistance protein sugE
Quaternary ammonium compound-resistance protein sugE
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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