Regulog mini-ykkC - Enterobacteriales
| Regulator type: | RNA regulatory element |
| Name: | mini-ykkC |
| RFAM: | RF01068 |
| Regulation mode: | |
| Biological process: | Multidrug resistance |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By RNA motif - mini-ykkC
- By pathway - Multidrug resistance
| Genome | Genes | Operons |
|---|---|---|
| Escherichia coli str. K-12 substr. MG1655 | 1 | 1 |
| Salmonella typhimurium LT2 | 1 | 1 |
| Citrobacter koseri ATCC BAA-895 | 1 | 1 |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | 1 | 1 |
| Enterobacter sp. 638 | 1 | 1 |
| Erwinia amylovora ATCC 49946 | ||
| Yersinia pestis KIM | ||
| Serratia proteamaculans 568 | 1 | 1 |
| Erwinia carotovora subsp. atroseptica SCRI1043 | 1 | 1 |
| Edwardsiella tarda EIB202 | 1 | 1 |
| Proteus mirabilis HI4320 | 1 | 1 |
| Photorhabdus luminescens subsp. laumondii TTO1 | 1 | 1 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| ucaA |
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Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -66 score = 38.68 sequence = GCGATGGACGACCAT... Gene: ECA1917: Urea carboxylase (EC 6.3.4.6) |
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Urea carboxylase (EC 6.3.4.6) |
| CRON 2. | |||||||||||||
| ykkC |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -63 score = 46.34 sequence = TTGCAGGACGACCTG... Gene: b4148: Quaternary ammonium compound-resistance protein sugE |
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Salmonella typhimurium LT2 Site: position = -65 score = 39.65 sequence = TTACAGGACGACCTG... Gene: STM4338: Quaternary ammonium compound-resistance protein sugE |
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Citrobacter koseri ATCC BAA-895 Site: position = -64 score = 41.87 sequence = CTTTGCAGGACGACC... Gene: CKO_03683: Quaternary ammonium compound-resistance protein sugE |
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Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -57 score = 41.45 sequence = TTACGGGACGACCCG... Gene: KPN_04548: Quaternary ammonium compound-resistance protein sugE |
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Enterobacter sp. 638 Site: position = -73 score = 42.1 sequence = TTGCGGGACGACCTG... Gene: Ent638_0337: Quaternary ammonium compound-resistance protein sugE |
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Gene: y0613: Quaternary ammonium compound-resistance protein sugE |
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Serratia proteamaculans 568 Site: position = -64 score = 41.2 sequence = AAACGGGACGACCTG... Gene: Spro_0415: Quaternary ammonium compound-resistance protein sugE |
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Edwardsiella tarda EIB202 Site: position = -79 score = 33.15 sequence = GTGCGGGACGACCCG... Gene: ETAE_0334: Quaternary ammonium compound-resistance protein sugE |
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Proteus mirabilis HI4320 Site: position = -69 score = 39.06 sequence = GGCTGGGACGACCCA... Gene: PMI3584: Quaternary ammonium compound-resistance protein sugE |
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Photorhabdus luminescens subsp. laumondii TTO1 Site: position = -71 score = 38.77 sequence = TTATCCGGGACGACC... Gene: plu4129: Quaternary ammonium compound-resistance protein sugE |
Quaternary ammonium compound-resistance protein sugE |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |