Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog mini-ykkC - Burkholderia

Properties
Regulator type: RNA regulatory element
Name: mini-ykkC
RFAM: RF01068
Regulation mode:
Biological process: Multidrug resistance
Effector:
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Burkholderia pseudomallei K96243 1 1
Burkholderia mallei ATCC 23344 1 1
Burkholderia sp. 383 1 1
Burkholderia cepacia AMMD 1 1
Burkholderia vietnamiensis G4 1 1
Burkholderia glumae BGR1 1 1
Burkholderia xenovorans LB400 1 1
Burkholderia phymatum STM815 3 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ykkC
*
Burkholderia pseudomallei K96243

Site:
position = -69
score = 45.01
sequence = CCCGGGGACGACCCC...

Gene: BPSL1177: Quaternary ammonium compound-resistance protein sugE
*
Burkholderia mallei ATCC 23344

Site:
position = -71
score = 45.01
sequence = TGCCCGGGGACGACC...

Gene: BMA1870: Quaternary ammonium compound-resistance protein sugE
*
Burkholderia sp. 383

Site:
position = 16
score = 43.76
sequence = CGCCCGGGGACGACC...

Gene: Bcep18194_A5609: Quaternary ammonium compound-resistance protein sugE
*
Burkholderia cepacia AMMD

Site:
position = -68
score = 44.95
sequence = CGCCCGGGGACGACC...

Gene: Bamb_2320: Quaternary ammonium compound-resistance protein sugE
*
Burkholderia vietnamiensis G4

Site:
position = -68
score = 39.15
sequence = CGCCCGGGGACGGCC...

Gene: Bcep1808_2367: Quaternary ammonium compound-resistance protein sugE
*
Burkholderia glumae BGR1

Site:
position = -70
score = 40.74
sequence = CGAACCGGGACGACC...

Gene: bglu_1g26230: Quaternary ammonium compound-resistance protein sugE
*
Burkholderia xenovorans LB400

Site:
position = -63
score = 38.1
sequence = CGTAAGGACGACCTT...

Gene: Bxe_A3247: Quaternary ammonium compound-resistance protein sugE
*
Burkholderia phymatum STM815

Site:
position = -68
score = 44.67
sequence = TCGGCAAGGACGGCC...

Gene: Bphy_2052: Quaternary ammonium compound-resistance protein sugE
Quaternary ammonium compound-resistance protein sugE
 
CRON 2.
ucaA
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383
 
Burkholderia cepacia AMMD
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_5578: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ...
 
Burkholderia glumae BGR1
 
Burkholderia xenovorans LB400

Gene: Bxe_B1384: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ...
*
Burkholderia phymatum STM815

Site:
position = -68
score = 41.8
sequence = GCCGTGGACGACCTC...

Gene: Bphy_3979: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ...
Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ...
ucaB
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383
 
Burkholderia cepacia AMMD
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_5579: Allophanate hydrolase (EC 3.5.1.54)
 
Burkholderia glumae BGR1
 
Burkholderia xenovorans LB400

Gene: Bxe_B1385: Allophanate hydrolase (EC 3.5.1.54)
 
Burkholderia phymatum STM815

Gene: Bphy_3980: Allophanate hydrolase (EC 3.5.1.54)
Allophanate hydrolase (EC 3.5.1.54)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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