Regulog mini-ykkC - Burkholderia
| Regulator type: | RNA regulatory element |
| Name: | mini-ykkC |
| RFAM: | RF01068 |
| Regulation mode: | |
| Biological process: | Multidrug resistance |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Burkholderia
- By RNA motif - mini-ykkC
- By pathway - Multidrug resistance
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia pseudomallei K96243 | 1 | 1 |
| Burkholderia mallei ATCC 23344 | 1 | 1 |
| Burkholderia sp. 383 | 1 | 1 |
| Burkholderia cepacia AMMD | 1 | 1 |
| Burkholderia vietnamiensis G4 | 1 | 1 |
| Burkholderia glumae BGR1 | 1 | 1 |
| Burkholderia xenovorans LB400 | 1 | 1 |
| Burkholderia phymatum STM815 | 3 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| ykkC |
*
Burkholderia pseudomallei K96243 Site: position = -69 score = 45.01 sequence = CCCGGGGACGACCCC... Gene: BPSL1177: Quaternary ammonium compound-resistance protein sugE |
*
Burkholderia mallei ATCC 23344 Site: position = -71 score = 45.01 sequence = TGCCCGGGGACGACC... Gene: BMA1870: Quaternary ammonium compound-resistance protein sugE |
*
Burkholderia sp. 383 Site: position = 16 score = 43.76 sequence = CGCCCGGGGACGACC... Gene: Bcep18194_A5609: Quaternary ammonium compound-resistance protein sugE |
*
Burkholderia cepacia AMMD Site: position = -68 score = 44.95 sequence = CGCCCGGGGACGACC... Gene: Bamb_2320: Quaternary ammonium compound-resistance protein sugE |
*
Burkholderia vietnamiensis G4 Site: position = -68 score = 39.15 sequence = CGCCCGGGGACGGCC... Gene: Bcep1808_2367: Quaternary ammonium compound-resistance protein sugE |
*
Burkholderia glumae BGR1 Site: position = -70 score = 40.74 sequence = CGAACCGGGACGACC... Gene: bglu_1g26230: Quaternary ammonium compound-resistance protein sugE |
*
Burkholderia xenovorans LB400 Site: position = -63 score = 38.1 sequence = CGTAAGGACGACCTT... Gene: Bxe_A3247: Quaternary ammonium compound-resistance protein sugE |
*
Burkholderia phymatum STM815 Site: position = -68 score = 44.67 sequence = TCGGCAAGGACGGCC... Gene: Bphy_2052: Quaternary ammonium compound-resistance protein sugE |
Quaternary ammonium compound-resistance protein sugE |
| CRON 2. | |||||||||
| ucaA |
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Gene: Bcep1808_5578: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ... |
|
Gene: Bxe_B1384: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ... |
*
Burkholderia phymatum STM815 Site: position = -68 score = 41.8 sequence = GCCGTGGACGACCTC... Gene: Bphy_3979: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ... |
Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ... |
| ucaB |
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Gene: Bcep1808_5579: Allophanate hydrolase (EC 3.5.1.54) |
|
Gene: Bxe_B1385: Allophanate hydrolase (EC 3.5.1.54) |
Gene: Bphy_3980: Allophanate hydrolase (EC 3.5.1.54) |
Allophanate hydrolase (EC 3.5.1.54) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |