Regulog mini-ykkC - Pseudomonadaceae
| Regulator type: | RNA regulatory element |
| Name: | mini-ykkC |
| RFAM: | RF01068 |
| Regulation mode: | |
| Biological process: | Multidrug resistance |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By RNA motif - mini-ykkC
- By pathway - Multidrug resistance
| Genome | Genes | Operons |
|---|---|---|
| Pseudomonas aeruginosa PAO1 | 2 | 2 |
| Pseudomonas entomophila L48 | 1 | 1 |
| Pseudomonas putida KT2440 | 1 | 1 |
| Pseudomonas syringae pv. tomato str. DC3000 | 2 | 1 |
| Pseudomonas fluorescens Pf-5 | 1 | 1 |
| Pseudomonas mendocina ymp | 1 | 1 |
| Pseudomonas stutzeri A1501 | 1 | 1 |
| Azotobacter vinelandii AvOP |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| ucaA |
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*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -92 score = 40.99 sequence = GCAACGGACGACCGT... Gene: PSPTO4243: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ... |
|
*
Pseudomonas mendocina ymp Site: position = -73 score = 40.18 sequence = TCACCACGGACGACC... Gene: Pmen_1358: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ... |
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Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ... |
| ucaB |
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Gene: PSPTO4244: Allophanate hydrolase (EC 3.5.1.54) |
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Gene: PST_2005: Allophanate hydrolase (EC 3.5.1.54) |
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Allophanate hydrolase (EC 3.5.1.54) |
| CRON 2. | |||||||||
| ykkC1 |
*
Pseudomonas aeruginosa PAO1 Site: position = -80 score = 31.34 sequence = AGTGAGGACGACCTC... Gene: PA3265: Quaternary ammonium compound-resistance protein sugE |
*
Pseudomonas entomophila L48 Site: position = -77 score = 41.17 sequence = ACTGTGAGGACGACC... Gene: PSEEN1409: Quaternary ammonium compound-resistance protein sugE |
*
Pseudomonas putida KT2440 Site: position = -78 score = 38.4 sequence = ACGGTGAGGACGACC... Gene: PP1701: Quaternary ammonium compound-resistance protein sugE |
|
*
Pseudomonas fluorescens Pf-5 Site: position = -71 score = 42.94 sequence = CGCGAGGACGACCTC... Gene: PFL_4408: Quaternary ammonium compound-resistance protein sugE |
Gene: Pmen_3146: Quaternary ammonium compound-resistance protein sugE |
|
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Quaternary ammonium compound-resistance protein sugE |
| CRON 3. | |||||||||
| ykkC2 |
*
Pseudomonas aeruginosa PAO1 Site: position = -62 score = 42.49 sequence = AAGCGGGACGACCCG... Gene: PA1882: Quaternary ammonium compound-resistance protein sugE |
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Quaternary ammonium compound-resistance protein sugE |
| CRON 4. | |||||||||
| ykkC3 |
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*
Pseudomonas stutzeri A1501 Site: position = 16 score = 31.86 sequence = CGCCGCGGGACGACC... Gene: PST_3492: Quaternary ammonium compound-resistance protein sugE |
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Quaternary ammonium compound-resistance protein sugE |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |