Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog mini-ykkC - Pseudomonadaceae

Properties
Regulator type: RNA regulatory element
Name: mini-ykkC
RFAM: RF01068
Regulation mode:
Biological process: Multidrug resistance
Effector:
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudomonas aeruginosa PAO1 2 2
Pseudomonas entomophila L48 1 1
Pseudomonas putida KT2440 1 1
Pseudomonas syringae pv. tomato str. DC3000 2 1
Pseudomonas fluorescens Pf-5 1 1
Pseudomonas mendocina ymp 1 1
Pseudomonas stutzeri A1501 1 1
Azotobacter vinelandii AvOP
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ucaA
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -92
score = 40.99
sequence = GCAACGGACGACCGT...

Gene: PSPTO4243: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ...
 
Pseudomonas fluorescens Pf-5
*
Pseudomonas mendocina ymp

Site:
position = -73
score = 40.18
sequence = TCACCACGGACGACC...

Gene: Pmen_1358: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ...
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ...
ucaB
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO4244: Allophanate hydrolase (EC 3.5.1.54)
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501

Gene: PST_2005: Allophanate hydrolase (EC 3.5.1.54)
 
Azotobacter vinelandii AvOP
Allophanate hydrolase (EC 3.5.1.54)
 
CRON 2.
ykkC1
*
Pseudomonas aeruginosa PAO1

Site:
position = -80
score = 31.34
sequence = AGTGAGGACGACCTC...

Gene: PA3265: Quaternary ammonium compound-resistance protein sugE
*
Pseudomonas entomophila L48

Site:
position = -77
score = 41.17
sequence = ACTGTGAGGACGACC...

Gene: PSEEN1409: Quaternary ammonium compound-resistance protein sugE
*
Pseudomonas putida KT2440

Site:
position = -78
score = 38.4
sequence = ACGGTGAGGACGACC...

Gene: PP1701: Quaternary ammonium compound-resistance protein sugE
 
Pseudomonas syringae pv. tomato str. DC3000
*
Pseudomonas fluorescens Pf-5

Site:
position = -71
score = 42.94
sequence = CGCGAGGACGACCTC...

Gene: PFL_4408: Quaternary ammonium compound-resistance protein sugE
 
Pseudomonas mendocina ymp

Gene: Pmen_3146: Quaternary ammonium compound-resistance protein sugE
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Quaternary ammonium compound-resistance protein sugE
 
CRON 3.
ykkC2
*
Pseudomonas aeruginosa PAO1

Site:
position = -62
score = 42.49
sequence = AAGCGGGACGACCCG...

Gene: PA1882: Quaternary ammonium compound-resistance protein sugE
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Quaternary ammonium compound-resistance protein sugE
 
CRON 4.
ykkC3
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
*
Pseudomonas stutzeri A1501

Site:
position = 16
score = 31.86
sequence = CGCCGCGGGACGACC...

Gene: PST_3492: Quaternary ammonium compound-resistance protein sugE
 
Azotobacter vinelandii AvOP
Quaternary ammonium compound-resistance protein sugE
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD