Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog mini-ykkC - Caulobacterales

Properties
Regulator type: RNA regulatory element
Name: mini-ykkC
RFAM: RF01068
Regulation mode:
Biological process: Multidrug resistance
Effector:
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Caulobacter crescentus CB15 1 1
Caulobacter segnis ATCC 21756 1 1
Caulobacter sp. K31 1 1
Phenylobacterium zucineum HLK1 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ykkC
*
Caulobacter crescentus CB15

Site:
position = -68
score = 46.46
sequence = GGCGCGGGGACGACC...

Gene: CC3443: Quaternary ammonium compound-resistance protein sugE
*
Caulobacter segnis ATCC 21756

Site:
position = -69
score = 50.41
sequence = CGCGGGGACGACCCC...

Gene: Cseg_0241: Quaternary ammonium compound-resistance protein sugE
*
Caulobacter sp. K31

Site:
position = -128
score = 46.86
sequence = GGCGCGGGGACGACC...

Gene: Caul_4732: Quaternary ammonium compound-resistance protein sugE
*
Phenylobacterium zucineum HLK1

Site:
position = -69
score = 42.73
sequence = GCCGGGGACGACCCC...

Gene: PHZ_c0240: Quaternary ammonium compound-resistance protein sugE
Quaternary ammonium compound-resistance protein sugE
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD