Regulog mini-ykkC - Shewanellaceae
| Regulator type: | RNA regulatory element |
| Name: | mini-ykkC |
| RFAM: | RF01068 |
| Regulation mode: | |
| Biological process: | Multidrug resistance |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By RNA motif - mini-ykkC
- By pathway - Multidrug resistance
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | 1 | 1 |
| Shewanella putrefaciens CN-32 | 1 | 1 |
| Shewanella sp W3-18-1 | 1 | 1 |
| Shewanella sp ANA-3 | 1 | 1 |
| Shewanella sp MR-4 | 1 | 1 |
| Shewanella sp MR-7 | 1 | 1 |
| Shewanella baltica OS155 | 1 | 1 |
| Shewanella denitrificans OS217 | ||
| Shewanella frigidimarina NCIMB 400 | ||
| Shewanella amazonensis SB2B | ||
| Shewanella loihica PV-4 | ||
| Shewanella pealeana ATCC 700345 | ||
| Shewanella halifaxensis HAW-EB4 | ||
| Shewanella piezotolerans WP3 | ||
| Shewanella sediminis HAW-EB3 | ||
| Shewanella woodyi ATCC 51908 |
| Genes | Function | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||
| ykkC |
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Shewanella oneidensis MR-1 Site: position = -62 score = 43.77 sequence = CTTAGGGACGACCCT... Gene: SO_1901: Quaternary ammonium compound-resistance protein sugE |
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Shewanella putrefaciens CN-32 Site: position = -63 score = 44.29 sequence = CTTAGGGACGACCCT... Gene: Sputcn32_1722: Quaternary ammonium compound-resistance protein sugE |
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Shewanella sp W3-18-1 Site: position = -65 score = 44.29 sequence = GGCTTAGGGACGACC... Gene: Sputw3181_2303: Quaternary ammonium compound-resistance protein sugE |
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Shewanella sp ANA-3 Site: position = -62 score = 43.77 sequence = CTTAGGGACGACCCT... Gene: Shewana3_1676: Quaternary ammonium compound-resistance protein sugE |
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Shewanella sp MR-4 Site: position = -62 score = 43.77 sequence = CTTAGGGACGACCCT... Gene: Shewmr4_1608: Quaternary ammonium compound-resistance protein sugE |
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Shewanella sp MR-7 Site: position = -62 score = 41.5 sequence = CTTAGGGACGACCTT... Gene: Shewmr7_1683: Quaternary ammonium compound-resistance protein sugE |
*
Shewanella baltica OS155 Site: position = -65 score = 46.12 sequence = GGCTTAGGGACGACC... Gene: Sbal_2825: Quaternary ammonium compound-resistance protein sugE |
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Quaternary ammonium compound-resistance protein sugE |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |