Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog mini-ykkC - Shewanellaceae

Properties
Regulator type: RNA regulatory element
Name: mini-ykkC
RFAM: RF01068
Regulation mode:
Biological process: Multidrug resistance
Effector:
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1 1 1
Shewanella putrefaciens CN-32 1 1
Shewanella sp W3-18-1 1 1
Shewanella sp ANA-3 1 1
Shewanella sp MR-4 1 1
Shewanella sp MR-7 1 1
Shewanella baltica OS155 1 1
Shewanella denitrificans OS217
Shewanella frigidimarina NCIMB 400
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella pealeana ATCC 700345
Shewanella halifaxensis HAW-EB4
Shewanella piezotolerans WP3
Shewanella sediminis HAW-EB3
Shewanella woodyi ATCC 51908
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ykkC
*
Shewanella oneidensis MR-1

Site:
position = -62
score = 43.77
sequence = CTTAGGGACGACCCT...

Gene: SO_1901: Quaternary ammonium compound-resistance protein sugE
*
Shewanella putrefaciens CN-32

Site:
position = -63
score = 44.29
sequence = CTTAGGGACGACCCT...

Gene: Sputcn32_1722: Quaternary ammonium compound-resistance protein sugE
*
Shewanella sp W3-18-1

Site:
position = -65
score = 44.29
sequence = GGCTTAGGGACGACC...

Gene: Sputw3181_2303: Quaternary ammonium compound-resistance protein sugE
*
Shewanella sp ANA-3

Site:
position = -62
score = 43.77
sequence = CTTAGGGACGACCCT...

Gene: Shewana3_1676: Quaternary ammonium compound-resistance protein sugE
*
Shewanella sp MR-4

Site:
position = -62
score = 43.77
sequence = CTTAGGGACGACCCT...

Gene: Shewmr4_1608: Quaternary ammonium compound-resistance protein sugE
*
Shewanella sp MR-7

Site:
position = -62
score = 41.5
sequence = CTTAGGGACGACCTT...

Gene: Shewmr7_1683: Quaternary ammonium compound-resistance protein sugE
*
Shewanella baltica OS155

Site:
position = -65
score = 46.12
sequence = GGCTTAGGGACGACC...

Gene: Sbal_2825: Quaternary ammonium compound-resistance protein sugE
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Quaternary ammonium compound-resistance protein sugE
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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