Regulog VSAK1_25095 - Vibrionales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Xanthine utilization; Allantoin utilization |
| Effector: | |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Vibrionales
- By TF family - GntR/Others
- By pathway - Xanthine utilization
- By pathway - Allantoin utilization
| Genome | Genes | Operons |
|---|---|---|
| Vibrio angustum S14 | ||
| Vibrio cholerae O1 biovar eltor str. N16961 | ||
| Vibrio fischeri ES114 | ||
| Vibrio harveyi ATCC BAA-1116 | ||
| Vibrio parahaemolyticus RIMD 2210633 | ||
| Vibrio salmonicida LFI1238 | ||
| Vibrio shilonii AK1 | 15 | 6 |
| Vibrio splendidus LGP32 | ||
| Vibrio vulnificus CMCP6 | ||
| Photobacterium profundum SS9 | 13 | 7 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| VSAK1_25095 |
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Vibrio shilonii AK1 Site: position = -64 score = 4.72993 sequence = TTGTATACAA Gene: VSAK1_25095: Transcriptional regulator, GntR family |
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Photobacterium profundum SS9 Site: position = -100 score = 4.78437 sequence = TTGTACACAA Gene: PBPRA2242: Transcriptional regulator, GntR family |
Transcriptional regulator, GntR family |
| CRON 2. | |||||||||||
| PA1517 |
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Vibrio shilonii AK1 Site: position = -270 score = 4.09416 sequence = ATGTACACAA Site: position = -79 score = 4.72993 sequence = TTGTATACAA Site: position = -313 score = 4.51438 sequence = CTGTATACAA Gene: VSAK1_24960: putative uricase |
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Photobacterium profundum SS9 Site: position = -154 score = 4.72993 sequence = TTGTATACAA Site: position = -323 score = 4.09416 sequence = ATGTACACAA Gene: PBPRA2263: putative uricase |
putative uricase |
| uraO |
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Gene: VSAK1_24965: Urate oxidase (EC 1.7.3.3) |
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Gene: PBPRA2262: Urate oxidase (EC 1.7.3.3) |
Urate oxidase (EC 1.7.3.3) |
| alc |
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Gene: VSAK1_24970: Allantoicase (EC 3.5.3.4) |
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Gene: PBPRA2261: Allantoicase (EC 3.5.3.4) |
Allantoicase (EC 3.5.3.4) |
| allA |
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Gene: VSAK1_24975: Ureidoglycolate hydrolase (EC 3.5.3.19) |
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Gene: PBPRA2260: Ureidoglycolate hydrolase (EC 3.5.3.19) |
Ureidoglycolate hydrolase (EC 3.5.3.19) |
| PA1513 |
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Gene: VSAK1_24980: conserved hypothetical membrane protein, paralogue of Y20848 |
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Photobacterium profundum SS9 Site: position = -91 score = 3.74065 sequence = CGGTATACAA Gene: PBPRA2259: conserved hypothetical membrane protein, paralogue of Y20848 |
conserved hypothetical membrane protein, paralogue of Y20848 |
| CRON 3. | |||||||||||
| PA1518 |
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Vibrio shilonii AK1 Site: position = -290 score = 4.72993 sequence = TTGTATACAA Site: position = -99 score = 4.09416 sequence = TTGTGTACAT Site: position = -56 score = 4.51438 sequence = TTGTATACAG Gene: VSAK1_24955: 5-hydroxyisourate hydrolase |
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Photobacterium profundum SS9 Site: position = -65 score = 4.09416 sequence = TTGTGTACAT Site: position = -234 score = 4.72993 sequence = TTGTATACAA Gene: PBPRA2264: 5-hydroxyisourate hydrolase |
5-hydroxyisourate hydrolase |
| CRON 4. | |||||||||||
| PA1519 |
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Vibrio shilonii AK1 Site: position = -21 score = 3.79509 sequence = TTGTGTAAAG Gene: VSAK1_24950: Xanthine/uracil/thiamine/ascorbate permease family protein |
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Photobacterium profundum SS9 Site: position = -231 score = 4.72993 sequence = TTGTATACAA Gene: PBPRA2265: Xanthine/uracil/thiamine/ascorbate permease family protein |
Xanthine/uracil/thiamine/ascorbate permease family protein |
| VSAK1_24945 |
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Gene: VSAK1_24945: Xanthine/uracil permease |
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Gene: PBPRA2266: Xanthine/uracil permease |
Xanthine/uracil permease |
| VSAK1_24940 |
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Gene: VSAK1_24940: Guanine deaminase (EC 3.5.4.3); Hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.99.3) |
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Gene: PBPRA2267: Guanine deaminase (EC 3.5.4.3); Hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.99.3) |
Guanine deaminase (EC 3.5.4.3); Hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.99.3) |
| CRON 5. | |||||||||||
| VSAK1_24900 |
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Vibrio shilonii AK1 Site: position = -50 score = 4.01064 sequence = TAGTACACAA Site: position = -280 score = 4.72993 sequence = TTGTATACAA Site: position = -28 score = 4.72993 sequence = TTGTATACAA Gene: VSAK1_24900: Glyoxylate carboligase (EC 4.1.1.47) |
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Photobacterium profundum SS9 Site: position = -29 score = 4.72993 sequence = TTGTATACAA Site: position = -284 score = 4.03972 sequence = TTGTATACAT Gene: PBPRA2275: Glyoxylate carboligase (EC 4.1.1.47) |
Glyoxylate carboligase (EC 4.1.1.47) |
| VSAK1_24905 |
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Gene: VSAK1_24905: Hydroxypyruvate isomerase (EC 5.3.1.22) |
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Gene: PBPRA2274: Hydroxypyruvate isomerase (EC 5.3.1.22) |
Hydroxypyruvate isomerase (EC 5.3.1.22) |
| VSAK1_24910 |
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Gene: VSAK1_24910: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
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Gene: PBPRA2273: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
| CRON 6. | |||||||||||
| VSAK1_24895 |
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Vibrio shilonii AK1 Site: position = -42 score = 4.72993 sequence = TTGTATACAA Site: position = -272 score = 4.01064 sequence = TTGTGTACTA Site: position = -294 score = 4.72993 sequence = TTGTATACAA Gene: VSAK1_24895: malate synthase |
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Photobacterium profundum SS9 Site: position = -301 score = 4.72993 sequence = TTGTATACAA Site: position = -46 score = 4.03972 sequence = ATGTATACAA Gene: PBPRA2276: malate synthase |
malate synthase |
| glcG |
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Gene: VSAK1_24890: GLCG PROTEIN |
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Gene: PBPRA2277: GLCG PROTEIN |
GLCG PROTEIN |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |