Regulog VSAK1_25095 - Vibrionales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Xanthine utilization; Allantoin utilization
Effector:
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 25 sites [see more]

Member of regulog collections

By taxonomy - Vibrionales
By TF family - GntR/Others
By pathway - Xanthine utilization
By pathway - Allantoin utilization

Statistics of regulated genes
Genome	Genes	Operons
Vibrio angustum S14
Vibrio cholerae O1 biovar eltor str. N16961
Vibrio fischeri ES114
Vibrio harveyi ATCC BAA-1116
Vibrio parahaemolyticus RIMD 2210633
Vibrio salmonicida LFI1238
Vibrio shilonii AK1	15	6
Vibrio splendidus LGP32
Vibrio vulnificus CMCP6
Photobacterium profundum SS9	13	7

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
VSAK1_25095	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	* Vibrio shilonii AK1 Site: position = -64 score = 4.72993 sequence = TTGTATACAA Gene: VSAK1_25095: Transcriptional regulator, GntR family	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6	* Photobacterium profundum SS9 Site: position = -100 score = 4.78437 sequence = TTGTACACAA Gene: PBPRA2242: Transcriptional regulator, GntR family	Transcriptional regulator, GntR family

CRON 2.
PA1517	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	* Vibrio shilonii AK1 Site: position = -270 score = 4.09416 sequence = ATGTACACAA Site: position = -79 score = 4.72993 sequence = TTGTATACAA Site: position = -313 score = 4.51438 sequence = CTGTATACAA Gene: VSAK1_24960: putative uricase	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6	* Photobacterium profundum SS9 Site: position = -154 score = 4.72993 sequence = TTGTATACAA Site: position = -323 score = 4.09416 sequence = ATGTACACAA Gene: PBPRA2263: putative uricase	putative uricase
uraO	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	Vibrio shilonii AK1 Gene: VSAK1_24965: Urate oxidase (EC 1.7.3.3)	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6	Photobacterium profundum SS9 Gene: PBPRA2262: Urate oxidase (EC 1.7.3.3)	Urate oxidase (EC 1.7.3.3)
alc	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	Vibrio shilonii AK1 Gene: VSAK1_24970: Allantoicase (EC 3.5.3.4)	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6	Photobacterium profundum SS9 Gene: PBPRA2261: Allantoicase (EC 3.5.3.4)	Allantoicase (EC 3.5.3.4)
allA	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	Vibrio shilonii AK1 Gene: VSAK1_24975: Ureidoglycolate hydrolase (EC 3.5.3.19)	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6	Photobacterium profundum SS9 Gene: PBPRA2260: Ureidoglycolate hydrolase (EC 3.5.3.19)	Ureidoglycolate hydrolase (EC 3.5.3.19)
PA1513	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	Vibrio shilonii AK1 Gene: VSAK1_24980: conserved hypothetical membrane protein, paralogue of Y20848	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6	* Photobacterium profundum SS9 Site: position = -91 score = 3.74065 sequence = CGGTATACAA Gene: PBPRA2259: conserved hypothetical membrane protein, paralogue of Y20848	conserved hypothetical membrane protein, paralogue of Y20848

CRON 3.
PA1518	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	* Vibrio shilonii AK1 Site: position = -290 score = 4.72993 sequence = TTGTATACAA Site: position = -99 score = 4.09416 sequence = TTGTGTACAT Site: position = -56 score = 4.51438 sequence = TTGTATACAG Gene: VSAK1_24955: 5-hydroxyisourate hydrolase	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6	* Photobacterium profundum SS9 Site: position = -65 score = 4.09416 sequence = TTGTGTACAT Site: position = -234 score = 4.72993 sequence = TTGTATACAA Gene: PBPRA2264: 5-hydroxyisourate hydrolase	5-hydroxyisourate hydrolase

CRON 4.
PA1519	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	* Vibrio shilonii AK1 Site: position = -21 score = 3.79509 sequence = TTGTGTAAAG Gene: VSAK1_24950: Xanthine/uracil/thiamine/ascorbate permease family protein	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6	* Photobacterium profundum SS9 Site: position = -231 score = 4.72993 sequence = TTGTATACAA Gene: PBPRA2265: Xanthine/uracil/thiamine/ascorbate permease family protein	Xanthine/uracil/thiamine/ascorbate permease family protein
VSAK1_24945	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	Vibrio shilonii AK1 Gene: VSAK1_24945: Xanthine/uracil permease	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6	Photobacterium profundum SS9 Gene: PBPRA2266: Xanthine/uracil permease	Xanthine/uracil permease
VSAK1_24940	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	Vibrio shilonii AK1 Gene: VSAK1_24940: Guanine deaminase (EC 3.5.4.3); Hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.99.3)	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6	Photobacterium profundum SS9 Gene: PBPRA2267: Guanine deaminase (EC 3.5.4.3); Hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.99.3)	Guanine deaminase (EC 3.5.4.3); Hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.99.3)

CRON 5.
VSAK1_24900	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	* Vibrio shilonii AK1 Site: position = -50 score = 4.01064 sequence = TAGTACACAA Site: position = -280 score = 4.72993 sequence = TTGTATACAA Site: position = -28 score = 4.72993 sequence = TTGTATACAA Gene: VSAK1_24900: Glyoxylate carboligase (EC 4.1.1.47)	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6	* Photobacterium profundum SS9 Site: position = -29 score = 4.72993 sequence = TTGTATACAA Site: position = -284 score = 4.03972 sequence = TTGTATACAT Gene: PBPRA2275: Glyoxylate carboligase (EC 4.1.1.47)	Glyoxylate carboligase (EC 4.1.1.47)
VSAK1_24905	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	Vibrio shilonii AK1 Gene: VSAK1_24905: Hydroxypyruvate isomerase (EC 5.3.1.22)	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6	Photobacterium profundum SS9 Gene: PBPRA2274: Hydroxypyruvate isomerase (EC 5.3.1.22)	Hydroxypyruvate isomerase (EC 5.3.1.22)
VSAK1_24910	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	Vibrio shilonii AK1 Gene: VSAK1_24910: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6	Photobacterium profundum SS9 Gene: PBPRA2273: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)	2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)

CRON 6.
VSAK1_24895	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	* Vibrio shilonii AK1 Site: position = -42 score = 4.72993 sequence = TTGTATACAA Site: position = -272 score = 4.01064 sequence = TTGTGTACTA Site: position = -294 score = 4.72993 sequence = TTGTATACAA Gene: VSAK1_24895: malate synthase	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6	* Photobacterium profundum SS9 Site: position = -301 score = 4.72993 sequence = TTGTATACAA Site: position = -46 score = 4.03972 sequence = ATGTATACAA Gene: PBPRA2276: malate synthase	malate synthase
glcG	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio salmonicida LFI1238	Vibrio shilonii AK1 Gene: VSAK1_24890: GLCG PROTEIN	Vibrio splendidus LGP32	Vibrio vulnificus CMCP6	Photobacterium profundum SS9 Gene: PBPRA2277: GLCG PROTEIN	GLCG PROTEIN

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog VSAK1_25095 - Vibrionales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --