Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of PhnR in Vibrio parahaemolyticus RIMD 2210633

Properties
Regulator type: Transcription factor
TF locus tag: VPA0240
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Phosphonate utilization; 2-aminoethylphosphonate utilization
Effector:
Regulog: PhnR - Vibrionales
Statistics of regulated genes:
- Genes 15
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 48 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -211
Score: 4.2
Sequence: ATTCTGACCTAGTCCAATAG
Position: -30
Score: 3.8
Sequence: TTACTGACCTAGTCCAGAAG
Locus tag: VPA0354
Name: phnS2
Funciton: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)
Locus tag: VPA0353
Name: PF01663
Funciton: type I phosphodiesterase
Locus tag: VPA0352
Name: phnU2
Funciton: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)
Locus tag: VPA0351
Name: phnV2
Funciton: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)
Locus tag: VPA0350
Name: phnT2
Funciton: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)
Locus tag: VPA0349
Name: COG0560
Funciton: Phosphoserine phosphatase (EC 3.1.3.3)
VPA0354
phnS2
2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)
VPA0353
PF01663
type I phosphodiesterase
VPA0352
phnU2
2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)
VPA0351
phnV2
2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)
VPA0350
phnT2
2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)
VPA0349
COG0560
Phosphoserine phosphatase (EC 3.1.3.3)
Position: -240
Score: 5.4
Sequence: ATTTTGGTCTGTACCAGTTG
Position: -42
Score: 5
Sequence: TTTCTGGTGTAGACCAATTA
Locus tag: VPA0235
Name: phnW
Funciton: 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37)
Locus tag: VPA0234
Name: COG0160
Funciton: 4-aminobutyrate aminotransferase and related aminotransferases
Locus tag: VPA0233
Name: phnX
Funciton: 2-phosphonoacetaldehyde hydrolase (EC 3.11.1.1)
VPA0235
phnW
2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37)
VPA0234
COG0160
4-aminobutyrate aminotransferase and related aminotransferases
VPA0233
phnX
2-phosphonoacetaldehyde hydrolase (EC 3.11.1.1)
Position: -18
Score: 3.6
Sequence: CTATTGGACTAGGTCAGAAT
Locus tag: VPA0355
Name: phnR2
Funciton: 2-aminoethylphosphonate utilization regulator, GntR family
VPA0355
phnR2
2-aminoethylphosphonate utilization regulator, GntR family
Position: -31
Score: 5.6
Sequence: AAGTTGGTATATACCATTTG
Locus tag: VPA0238
Name: phnT
Funciton: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)
Locus tag: VPA0239
Name: phnU
Funciton: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.
Locus tag: VPA0240
Name: phnR
Funciton: 2-aminoethylphosphonate utilization regulator, GntR family
Locus tag: VPA0241
Name: VCA0599
Funciton: Permease of the drug/metabolite transporter (DMT) superfamily
VPA0238
phnT
2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)
VPA0239
phnU
2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.
VPA0240
phnR
2-aminoethylphosphonate utilization regulator, GntR family
VPA0241
VCA0599
Permease of the drug/metabolite transporter (DMT) superfamily
Position: -246
Score: 5
Sequence: TAATTGGTCTACACCAGAAA
Position: -48
Score: 5.4
Sequence: CAACTGGTACAGACCAAAAT
Locus tag: VPA0236
Name: phnS
Funciton: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)
VPA0236
phnS
2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)
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