Regulog Zur - Vibrionales

Properties
Regulator type:	Transcription factor
Regulator family:	FUR
Regulation mode:	repressor
Biological process:	Zinc homeostasis
Effector:	Zinc ion, (Zn2+)
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 62 sites [see more]

Member of regulog collections

By taxonomy - Vibrionales
By trascription factor - Zur
By TF family - FUR
By effector - Zinc ion, (Zn2+)
By pathway - Zinc homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Vibrio cholerae O1 biovar eltor str. N16961	13	6
Vibrio vulnificus CMCP6	13	7
Vibrio harveyi ATCC BAA-1116	9	5
Vibrio parahaemolyticus RIMD 2210633	16	7
Vibrio shilonii AK1	14	8
Vibrio splendidus LGP32	11	6
Vibrio fischeri ES114	11	6
Vibrio salmonicida LFI1238	11	5
Vibrio angustum S14	6	4
Photobacterium profundum SS9	10	4

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
VC2551	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -50 score = 5.14441 sequence = GACTTGTTATATTATAACAAGCC Gene: VC2551: hypothetical protein	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -43 score = 5.26494 sequence = TGAGTGTTATATTATAACACCCG Gene: VP0303: hypothetical protein	Vibrio shilonii AK1	* Vibrio splendidus LGP32 Site: position = -53 score = 6.21452 sequence = ATATTGTTATATTATAACAGTAT Gene: VS_2780: hypothetical protein	Vibrio fischeri ES114	* Vibrio salmonicida LFI1238 Site: position = -48 score = 6.37102 sequence = AAAATGTTATATTATTACATTTA Gene: VSAL_I0429: hypothetical protein	Vibrio angustum S14	* Photobacterium profundum SS9 Site: position = -25 score = 6.16298 sequence = GTAATGTTATATTATTACATTAC Gene: PBPRA0375: hypothetical protein	hypothetical protein
zbp	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC2552: Predicted zinc-binding protein	* Vibrio vulnificus CMCP6 Site: position = -381 score = 5.58896 sequence = TAGCTGTTATATTGTAACACTTT Gene: VV1_0717: Predicted zinc-binding protein	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_00774: Predicted zinc-binding protein	Vibrio parahaemolyticus RIMD 2210633 Gene: VP0302: Predicted zinc-binding protein	* Vibrio shilonii AK1 Site: position = -391 score = 5.93767 sequence = GATTTGTTATAACATAACAAATC Gene: VSAK1_01829: Predicted zinc-binding protein	Vibrio splendidus LGP32 Gene: VS_2781: Predicted zinc-binding protein	* Vibrio fischeri ES114 Site: position = -389 score = 6.37102 sequence = AAAATGTTATATTATTACATTTA Gene: VF_0328: Predicted zinc-binding protein	Vibrio salmonicida LFI1238 Gene: VSAL_I0428: Predicted zinc-binding protein	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRA0374: Predicted zinc-binding protein	Predicted zinc-binding protein

CRON 2.
rpmE2	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -40 score = 6.86119 sequence = AAAATGTTATAACATAACAATTT Gene: VC0878: LSU ribosomal protein L31p	* Vibrio vulnificus CMCP6 Site: position = -37 score = 6.68323 sequence = AATATGTTATAACATAACAATTA Gene: VV1_1840: LSU ribosomal protein L31p	* Vibrio harveyi ATCC BAA-1116 Site: position = -41 score = 6.57735 sequence = ATAATGTTATAACATAACAATCA Gene: VIBHAR_03250: LSU ribosomal protein L31p	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -41 score = 6.86119 sequence = AAAATGTTATAACATAACAATTT Gene: VP2331: LSU ribosomal protein L31p	* Vibrio shilonii AK1 Site: position = -31 score = 6.53457 sequence = GCAATGTTATAACATAACAATTA Gene: VSAK1_20814: LSU ribosomal protein L31p	* Vibrio splendidus LGP32 Site: position = -43 score = 5.60552 sequence = GATATGTTATAACGTATCAAATT Gene: VS_2366: LSU ribosomal protein L31p	Vibrio fischeri ES114	* Vibrio salmonicida LFI1238 Site: position = -47 score = 6.7011 sequence = GTTATGTTATAACATAACAATTA Gene: VSAL_I0890: LSU ribosomal protein L31p	* Vibrio angustum S14 Site: position = -43 score = 6.62971 sequence = GTTATGTTATAACATAACAATAA Gene: VAS14_13584: LSU ribosomal protein L31p	Photobacterium profundum SS9	LSU ribosomal protein L31p
rpmJ2	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC0879: LSU ribosomal protein L36p	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_03249: LSU ribosomal protein L36p	Vibrio parahaemolyticus RIMD 2210633 Gene: VP2330: LSU ribosomal protein L36p	Vibrio shilonii AK1 Gene: VSAK1_20809: LSU ribosomal protein L36p	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238 Gene: VSAL_I0889: LSU ribosomal protein L36p	Vibrio angustum S14 Gene: VAS14_13579: LSU ribosomal protein L36p	Photobacterium profundum SS9	LSU ribosomal protein L36p

CRON 3.
ribA	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -97 score = 6.18284 sequence = CATTTGTTATAACATAACAATTT Gene: VC1263: GTP cyclohydrolase II (EC 3.5.4.25)	* Vibrio vulnificus CMCP6 Site: position = -144 score = 6.08321 sequence = TTATTGTTATAATATAACAAAAC Gene: VV1_2234: GTP cyclohydrolase II (EC 3.5.4.25)	* Vibrio harveyi ATCC BAA-1116 Site: position = -154 score = 6.56042 sequence = TAAATGTTATATTATAACAATTG Gene: VIBHAR_02717: GTP cyclohydrolase II (EC 3.5.4.25)	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -207 score = 6.24594 sequence = AAATTGTTATACTATAACAATTT Gene: VP1921: GTP cyclohydrolase II (EC 3.5.4.25)	* Vibrio shilonii AK1 Site: position = -91 score = 6.63558 sequence = TAATTGTTATAATATAACAATTA Gene: VSAK1_04575: GTP cyclohydrolase II (EC 3.5.4.25)	* Vibrio splendidus LGP32 Site: position = -116 score = 6.65548 sequence = TAATTGTTATAATATAACAATTT Gene: VS_1924: GTP cyclohydrolase II (EC 3.5.4.25)	Vibrio fischeri ES114 Gene: VF_1189: GTP cyclohydrolase II (EC 3.5.4.25)	Vibrio salmonicida LFI1238 Gene: VSAL_I1787: GTP cyclohydrolase II (EC 3.5.4.25)	* Vibrio angustum S14 Site: position = -260 score = 6.19201 sequence = GATGTGTTATAATATAACATATT Gene: VAS14_03723: GTP cyclohydrolase II (EC 3.5.4.25)	2 Photobacterium profundum SS9 Gene: PBPRA1519: GTP cyclohydrolase II (EC 3.5.4.25) Gene: PBPRA1520: GTP cyclohydrolase II (EC 3.5.4.25)	GTP cyclohydrolase II (EC 3.5.4.25)

CRON 4.
omr	Vibrio cholerae O1 biovar eltor str. N16961	* Vibrio vulnificus CMCP6 Site: position = -125 score = 6.65423 sequence = GAAATGTTATAACATAACATTTG Gene: VV1_0360: predicted zinc-related TonB-dependent outer membrane transporter	* Vibrio harveyi ATCC BAA-1116 Site: position = -36 score = 4.83677 sequence = GTGGTGTAATAACATAACAAAGT Site: position = -70 score = 5.25222 sequence = TCTTTGTTATGTTATAACATCTG Gene: VIBHAR_06466: predicted zinc-related TonB-dependent outer membrane transporter	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -62 score = 6.16968 sequence = TAATTGTTATATTATAACAACTT Site: position = -33 score = 6.31617 sequence = CATATGTTATAACATAACAATAA Gene: VPA1308: predicted zinc-related TonB-dependent outer membrane transporter	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	predicted zinc-related TonB-dependent outer membrane transporter
znuA2	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV1_0359: Zinc ABC transporter, periplasmic-binding protein ZnuA	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_06465: Zinc ABC transporter, periplasmic-binding protein ZnuA	Vibrio parahaemolyticus RIMD 2210633 Gene: VPA1307: Zinc ABC transporter, periplasmic-binding protein ZnuA	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Zinc ABC transporter, periplasmic-binding protein ZnuA
znuB2	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV1_0358: Zinc ABC transporter, inner membrane permease protein ZnuB	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_06464: Zinc ABC transporter, inner membrane permease protein ZnuB	Vibrio parahaemolyticus RIMD 2210633 Gene: VPA1306: Zinc ABC transporter, inner membrane permease protein ZnuB	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Zinc ABC transporter, inner membrane permease protein ZnuB

CRON 5.
znuC	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -47 score = 5.54101 sequence = TGAATGTTACTTTATAACATAAC Gene: VC2082: Zinc ABC transporter, ATP-binding protein ZnuC	* Vibrio vulnificus CMCP6 Site: position = -46 score = 6.25895 sequence = AAAATGTTACATTATAACACTCA Gene: VV1_0152: Zinc ABC transporter, ATP-binding protein ZnuC	* Vibrio harveyi ATCC BAA-1116 Site: position = -46 score = 6.72922 sequence = ATAATGTTACATTATAACATTAT Gene: VIBHAR_01360: Zinc ABC transporter, ATP-binding protein ZnuC	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -46 score = 6.72922 sequence = ATAATGTTACATTATAACATTAT Gene: VP0852: Zinc ABC transporter, ATP-binding protein ZnuC	2 Vibrio shilonii AK1* Site: position = -46 score = 6.61285 sequence = GAAATGTTACATTATAACAATAA Gene: VSAK1_08973: Zinc ABC transporter, ATP-binding protein ZnuC Site: position = -102 score = 6.33008 sequence = GTTATGTTATAACATAACTTTTA Gene: VSAK1_17572: Zinc ABC transporter, ATP-binding protein ZnuC	* Vibrio splendidus LGP32 Site: position = -46 score = 6.38187 sequence = TAAATGTTACATTATAACATTAG Gene: VS_2238: Zinc ABC transporter, ATP-binding protein ZnuC	2 Vibrio fischeri ES114* Site: position = -50 score = 6.55182 sequence = AAAATGTTACATTATAACACTTA Gene: VF_0829: Zinc ABC transporter, ATP-binding protein ZnuC Site: position = -90 score = 6.7011 sequence = GTTATGTTATAACATAACAATTA Gene: VF_2367: Zinc ABC transporter, ATP-binding protein ZnuC	* Vibrio salmonicida LFI1238 Site: position = -50 score = 6.55182 sequence = AAAATGTTACATTATAACACTTA Gene: VSAL_I0851: Zinc ABC transporter, ATP-binding protein ZnuC	* Vibrio angustum S14 Site: position = -83 score = 6.33806 sequence = ATAATGTTACAATATAACATATC Site: position = -59 score = 6.70743 sequence = GTAATGTTATATTATAACATTAC Gene: VAS14_17781: Zinc ABC transporter, ATP-binding protein ZnuC	* Photobacterium profundum SS9 Site: position = -55 score = 6.01422 sequence = GTGATGTTATAATATAACACCTT Gene: PBPRA1054: Zinc ABC transporter, ATP-binding protein ZnuC	Zinc ABC transporter, ATP-binding protein ZnuC
znuB	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC2083: Zinc ABC transporter, inner membrane permease protein ZnuB	Vibrio vulnificus CMCP6 Gene: VV1_0153: Zinc ABC transporter, inner membrane permease protein ZnuB	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_01359: Zinc ABC transporter, inner membrane permease protein ZnuB	Vibrio parahaemolyticus RIMD 2210633 Gene: VP0851: Zinc ABC transporter, inner membrane permease protein ZnuB	2 Vibrio shilonii AK1 Gene: VSAK1_08968: Zinc ABC transporter, inner membrane permease protein ZnuB Gene: VSAK1_17577: Zinc ABC transporter, inner membrane permease protein ZnuB	Vibrio splendidus LGP32 Gene: VS_2239: Zinc ABC transporter, inner membrane permease protein ZnuB	2 Vibrio fischeri ES114 Gene: VF_0828: Zinc ABC transporter, inner membrane permease protein ZnuB Gene: VF_2368: Zinc ABC transporter, inner membrane permease protein ZnuB	Vibrio salmonicida LFI1238 Gene: VSAL_I0850: Zinc ABC transporter, inner membrane permease protein ZnuB	Vibrio angustum S14 Gene: VAS14_17776: Zinc ABC transporter, inner membrane permease protein ZnuB	Photobacterium profundum SS9 Gene: PBPRA1053: Zinc ABC transporter, inner membrane permease protein ZnuB	Zinc ABC transporter, inner membrane permease protein ZnuB

CRON 6.
znuA	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -50 score = 5.88078 sequence = GTTATGTTATAAAGTAACATTCA Gene: VC2081: Zinc ABC transporter, periplasmic-binding protein ZnuA	* Vibrio vulnificus CMCP6 Site: position = -58 score = 6.30927 sequence = TGAGTGTTATAATGTAACATTTT Gene: VV1_0151: Zinc ABC transporter, periplasmic-binding protein ZnuA	* Vibrio harveyi ATCC BAA-1116 Site: position = -55 score = 6.77341 sequence = ATAATGTTATAATGTAACATTAT Gene: VIBHAR_01361: Zinc ABC transporter, periplasmic-binding protein ZnuA	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -55 score = 6.77341 sequence = ATAATGTTATAATGTAACATTAT Gene: VP0853: Zinc ABC transporter, periplasmic-binding protein ZnuA	2 Vibrio shilonii AK1* Site: position = -64 score = 6.46857 sequence = GTTATGTTATAACATAACAATTG Gene: VSAK1_17567: Zinc ABC transporter, periplasmic-binding protein ZnuA Site: position = -58 score = 6.37977 sequence = TTATTGTTATAATGTAACATTTC Gene: VSAK1_08978: Zinc ABC transporter, periplasmic-binding protein ZnuA	* Vibrio splendidus LGP32 Site: position = -60 score = 6.52923 sequence = CTAATGTTATAATGTAACATTTA Gene: VS_2237: Zinc ABC transporter, periplasmic-binding protein ZnuA	2 Vibrio fischeri ES114* Site: position = -79 score = 6.7011 sequence = GTTATGTTATAACATAACAATTA Gene: VF_2366: Zinc ABC transporter, periplasmic-binding protein ZnuA Site: position = -61 score = 6.46378 sequence = TAAGTGTTATAATGTAACATTTT Gene: VF_0830: Zinc ABC transporter, periplasmic-binding protein ZnuA	* Vibrio salmonicida LFI1238 Site: position = -61 score = 6.46378 sequence = TAAGTGTTATAATGTAACATTTT Gene: VSAL_I0852: Zinc ABC transporter, periplasmic-binding protein ZnuA	* Vibrio angustum S14 Site: position = -133 score = 6.77468 sequence = GTAATGTTATAATATAACATTAC Site: position = -109 score = 6.50813 sequence = GATATGTTATATTGTAACATTAT Gene: VAS14_17786: Zinc ABC transporter, periplasmic-binding protein ZnuA	2 Photobacterium profundum SS9* Site: position = 24 score = 5.59719 sequence = AAGGTGTTATATTATAACATCAC Gene: PBPRA1055: Zinc ABC transporter, periplasmic-binding protein ZnuA Gene: PBPRA1056: Zinc ABC transporter, periplasmic-binding protein ZnuA	Zinc ABC transporter, periplasmic-binding protein ZnuA

CRON 7.
VC2551	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -50 score = 5.14441 sequence = GACTTGTTATATTATAACAAGCC Gene: VC2551: hypothetical protein	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -43 score = 5.26494 sequence = TGAGTGTTATATTATAACACCCG Gene: VP0303: hypothetical protein	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	hypothetical protein
zbp	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC2552: Predicted zinc-binding protein	* Vibrio vulnificus CMCP6 Site: position = -381 score = 5.58896 sequence = TAGCTGTTATATTGTAACACTTT Gene: VV1_0717: Predicted zinc-binding protein	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_00774: Predicted zinc-binding protein	Vibrio parahaemolyticus RIMD 2210633 Gene: VP0302: Predicted zinc-binding protein	* Vibrio shilonii AK1 Site: position = -391 score = 5.93767 sequence = GATTTGTTATAACATAACAAATC Gene: VSAK1_01829: Predicted zinc-binding protein	* Vibrio splendidus LGP32 Site: position = -385 score = 6.21452 sequence = ATATTGTTATATTATAACAGTAT Gene: VS_2781: Predicted zinc-binding protein	* Vibrio fischeri ES114 Site: position = -389 score = 6.37102 sequence = AAAATGTTATATTATTACATTTA Gene: VF_0328: Predicted zinc-binding protein	* Vibrio salmonicida LFI1238 Site: position = -390 score = 6.37102 sequence = AAAATGTTATATTATTACATTTA Gene: VSAL_I0428: Predicted zinc-binding protein	Vibrio angustum S14	* Photobacterium profundum SS9 Site: position = -376 score = 6.16298 sequence = GTAATGTTATATTATTACATTAC Gene: PBPRA0374: Predicted zinc-binding protein	Predicted zinc-binding protein
VV1_0719	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC2553: ABC-type antimicrobial peptide transport system, ATPase component	Vibrio vulnificus CMCP6 Gene: VV1_0719: ABC-type antimicrobial peptide transport system, ATPase component	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_00773: ABC-type antimicrobial peptide transport system, ATPase component	Vibrio parahaemolyticus RIMD 2210633 Gene: VP0301: ABC-type antimicrobial peptide transport system, ATPase component	Vibrio shilonii AK1 Gene: VSAK1_01824: ABC-type antimicrobial peptide transport system, ATPase component	Vibrio splendidus LGP32 Gene: VS_2782: ABC-type antimicrobial peptide transport system, ATPase component	Vibrio fischeri ES114 Gene: VF_0327: ABC-type antimicrobial peptide transport system, ATPase component	Vibrio salmonicida LFI1238 Gene: VSAL_I0427: ABC-type antimicrobial peptide transport system, ATPase component	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRA0373: ABC-type antimicrobial peptide transport system, ATPase component	ABC-type antimicrobial peptide transport system, ATPase component
VC2554	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC2554: ABC-type antimicrobial peptide transport system, permease component	Vibrio vulnificus CMCP6 Gene: VV1_0720: ABC-type antimicrobial peptide transport system, permease component	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_00772: ABC-type antimicrobial peptide transport system, permease component	Vibrio parahaemolyticus RIMD 2210633 Gene: VP0300: ABC-type antimicrobial peptide transport system, permease component	Vibrio shilonii AK1 Gene: VSAK1_01819: ABC-type antimicrobial peptide transport system, permease component	Vibrio splendidus LGP32 Gene: VS_2783: ABC-type antimicrobial peptide transport system, permease component	Vibrio fischeri ES114 Gene: VF_0326: ABC-type antimicrobial peptide transport system, permease component	Vibrio salmonicida LFI1238 Gene: VSAL_I0426: ABC-type antimicrobial peptide transport system, permease component	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRA0372: ABC-type antimicrobial peptide transport system, permease component	ABC-type antimicrobial peptide transport system, permease component
VC2555	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC2555: FIG003461: hypothetical protein	Vibrio vulnificus CMCP6 Gene: VV1_0721: FIG003461: hypothetical protein	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_00771: FIG003461: hypothetical protein	Vibrio parahaemolyticus RIMD 2210633 Gene: VP0299: FIG003461: hypothetical protein	Vibrio shilonii AK1 Gene: VSAK1_01814: FIG003461: hypothetical protein	Vibrio splendidus LGP32 Gene: VS_2784: FIG003461: hypothetical protein	Vibrio fischeri ES114 Gene: VF_0325: FIG003461: hypothetical protein	Vibrio salmonicida LFI1238 Gene: VSAL_I0425: FIG003461: hypothetical protein	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRA0371: FIG003461: hypothetical protein	FIG003461: hypothetical protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Zur - Vibrionales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --