Regulon of NagC in Vibrio parahaemolyticus RIMD 2210633
| Regulator type: | Transcription factor |
| TF locus tag: | VP0828 |
| Regulator family: | ROK |
| Regulation mode: | repressor (activator) |
| Biological process: | N-acetylglucosamine utilization |
| Effector: | N-acetylglucosamine-6-phosphate |
| Regulog: | NagC - Vibrionales |
| Statistics of regulated genes: | |
| - Genes | 27 |
| - Operons | 19 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NagC
- By taxonomy - Vibrionales
- By TF family - ROK
- By effector - N-acetylglucosamine-6-phosphate
- By pathway - N-acetylglucosamine utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -151
Score: 4.7 Sequence: CTTATTTTTCAACGTTAAGTATG
Locus tag: VP1241
Name: tfoX1 Funciton: DNA transformation protein TfoX1 (Sxy) |
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tfoX1
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DNA transformation protein TfoX1 (Sxy)
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Position: -39
Score: 4.7 Sequence: GTTATCTTTAATCAGAAATTAAG
Locus tag: VP2157
Name: gapA Funciton: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Locus tag: VP2158
Name: aldE Funciton: Aldose 1-epimerase |
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gapA
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NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
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aldE
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Aldose 1-epimerase
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Position: -216
Score: 5.1 Sequence: TATTTTTTATATTATCAAATAAA
Locus tag: VP0497
Name: grcA Funciton: autonomous glycyl radical cofactor GrcA |
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grcA
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autonomous glycyl radical cofactor GrcA
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Position: -97
Score: 4.8 Sequence: ATTATTTTTAGTTGGAAATTTAC
Locus tag: VP3067
Name: glmU Funciton: N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) |
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glmU
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N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)
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Position: -192
Score: 5.3 Sequence: TTTATTTAGCGTCAAAAAATAAG
Locus tag: VP1023
Name: glgC Funciton: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
Locus tag: VP1024
Name: glgA Funciton: Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) |
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glgC
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Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
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glgA
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Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
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Position: -209
Score: 5.3 Sequence: TATTTTTTTAGAAAAAAAATAAG
Locus tag: VP0802
Name: ybfM Funciton: N-acetylglucosamine-regulated outer membrane porin |
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ybfM
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N-acetylglucosamine-regulated outer membrane porin
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Position: -122
Score: 5.4 Sequence: TTTATTTTACGCTTAGAAATAAC
Locus tag: VP0755
Name: hex Funciton: Beta-hexosaminidase (EC 3.2.1.52) |
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hex
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Beta-hexosaminidase (EC 3.2.1.52)
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Position: -199
Score: 5.5 Sequence: ATTTTTTTGTATAATAAAATAAG
Position: -105
Score: 5 Sequence: TTTAATTTGCGGAGCAAAATTAA
Locus tag: VP0831
Name: nagE1 Funciton: PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) |
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nagE1
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PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
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Position: -321
Score: 5.1 Sequence: GTAATTTTGTTACTAAAAATAAC
Position: -287
Score: 5 Sequence: TTTTATTTACGCCTTAAAATTAA
Locus tag: VP2046
Name: ptsG Funciton: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69) |
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ptsG
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PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
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Position: -132
Score: 5.1 Sequence: TTTGATTTGAAGCAAAAAATAAA
Locus tag: VP2562
Name: pyrG Funciton: CTP synthase (EC 6.3.4.2)
Locus tag: VP2561
Name: eno Funciton: Enolase (EC 4.2.1.11) |
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pyrG
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CTP synthase (EC 6.3.4.2)
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eno
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Enolase (EC 4.2.1.11)
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Position: -313
Score: 5.5 Sequence: CTTATTTTATTATACAAAAAAAT
Locus tag: VP0829
Name: nagA Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Locus tag: VP0828
Name: nagC Funciton: N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family |
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nagA
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N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
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nagC
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N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
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Position: -185
Score: 5.2 Sequence: TTTATTTTGAGCAGTAAAATATA
Locus tag: VPA1651
Name: mcp2 Funciton: N-acetylglucosamine regulated methyl-accepting chemotaxis protein |
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mcp2
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N-acetylglucosamine regulated methyl-accepting chemotaxis protein
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Position: -148
Score: 5.1 Sequence: CTTATTTCACGCTAAAAATTTAA
Locus tag: VP2629
Name: mcp Funciton: N-acetylglucosamine regulated methyl-accepting chemotaxis protein |
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mcp
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N-acetylglucosamine regulated methyl-accepting chemotaxis protein
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Position: -269
Score: 5.3 Sequence: CTTTTTTTTATTAAAAAAATAAC
Locus tag: VP1029
Name: VP1029 Funciton: Hypothetical protein
Locus tag: VP1028
Name: tfoX Funciton: DNA transformation protein TfoX |
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VP1029
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Hypothetical protein
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tfoX
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DNA transformation protein TfoX
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Position: -149
Score: 4.3 Sequence: CATTTTTCTTGTGACAAAATGTG
Locus tag: VP0619
Name: chi Funciton: Chitinase (EC 3.2.1.14) |
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chi
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Chitinase (EC 3.2.1.14)
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Position: -208
Score: 5.3 Sequence: TTTATTTCTAGCTTCAAAATAAA
Locus tag: VP0795
Name: ptsH Funciton: Phosphocarrier protein of PTS system
Locus tag: VP0794
Name: ptsI Funciton: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
Locus tag: VP0793
Name: crr Funciton: PTS system, glucose-specific IIA component (EC 2.7.1.69) |
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ptsH
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Phosphocarrier protein of PTS system
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ptsI
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Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
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crr
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PTS system, glucose-specific IIA component (EC 2.7.1.69)
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Position: -140
Score: 5.1 Sequence: AATTTTTTTTGACGAAAAAAAAC
Locus tag: VPA0055
Name: chiA Funciton: Chitinase (EC 3.2.1.14) |
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chiA
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Chitinase (EC 3.2.1.14)
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Position: -128
Score: 5.1 Sequence: TTTATTTCAAGCCTTGAAATAAA
Locus tag: VP2600
Name: pgk Funciton: Phosphoglycerate kinase (EC 2.7.2.3)
Locus tag: VP2599
Name: fbaA Funciton: Fructose-bisphosphate aldolase class II (EC 4.1.2.13) |
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pgk
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Phosphoglycerate kinase (EC 2.7.2.3)
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fbaA
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Fructose-bisphosphate aldolase class II (EC 4.1.2.13)
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Position: -231
Score: 4.6 Sequence: CTTAATTCAAGCCATAAATTTTA
Position: -63
Score: 5.4 Sequence: CTTATTTTATAATGCGAATTAAT
Locus tag: VPA0038
Name: nagB Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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nagB
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Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |