Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NagC in Vibrio parahaemolyticus RIMD 2210633

Properties
Regulator type: Transcription factor
TF locus tag: VP0828
Regulator family: ROK
Regulation mode: repressor (activator)
Biological process: N-acetylglucosamine utilization
Effector: N-acetylglucosamine-6-phosphate
Regulog: NagC - Vibrionales
Statistics of regulated genes:
- Genes 27
- Operons 19
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 199 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -151
Score: 4.7
Sequence: CTTATTTTTCAACGTTAAGTATG
Locus tag: VP1241
Name: tfoX1
Funciton: DNA transformation protein TfoX1 (Sxy)
VP1241
tfoX1
DNA transformation protein TfoX1 (Sxy)
Position: -39
Score: 4.7
Sequence: GTTATCTTTAATCAGAAATTAAG
Locus tag: VP2157
Name: gapA
Funciton: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Locus tag: VP2158
Name: aldE
Funciton: Aldose 1-epimerase
VP2157
gapA
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
VP2158
aldE
Aldose 1-epimerase
Position: -216
Score: 5.1
Sequence: TATTTTTTATATTATCAAATAAA
Locus tag: VP0497
Name: grcA
Funciton: autonomous glycyl radical cofactor GrcA
VP0497
grcA
autonomous glycyl radical cofactor GrcA
Position: -97
Score: 4.8
Sequence: ATTATTTTTAGTTGGAAATTTAC
Locus tag: VP3067
Name: glmU
Funciton: N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)
VP3067
glmU
N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)
Position: -192
Score: 5.3
Sequence: TTTATTTAGCGTCAAAAAATAAG
Locus tag: VP1023
Name: glgC
Funciton: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
Locus tag: VP1024
Name: glgA
Funciton: Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
VP1023
glgC
Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
VP1024
glgA
Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
Position: -209
Score: 5.3
Sequence: TATTTTTTTAGAAAAAAAATAAG
Locus tag: VP0802
Name: ybfM
Funciton: N-acetylglucosamine-regulated outer membrane porin
VP0802
ybfM
N-acetylglucosamine-regulated outer membrane porin
Position: -122
Score: 5.4
Sequence: TTTATTTTACGCTTAGAAATAAC
Locus tag: VP0755
Name: hex
Funciton: Beta-hexosaminidase (EC 3.2.1.52)
VP0755
hex
Beta-hexosaminidase (EC 3.2.1.52)
Position: -199
Score: 5.5
Sequence: ATTTTTTTGTATAATAAAATAAG
Position: -105
Score: 5
Sequence: TTTAATTTGCGGAGCAAAATTAA
Locus tag: VP0831
Name: nagE1
Funciton: PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
VP0831
nagE1
PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
Position: -321
Score: 5.1
Sequence: GTAATTTTGTTACTAAAAATAAC
Position: -287
Score: 5
Sequence: TTTTATTTACGCCTTAAAATTAA
Locus tag: VP2046
Name: ptsG
Funciton: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
VP2046
ptsG
PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
Position: -132
Score: 5.1
Sequence: TTTGATTTGAAGCAAAAAATAAA
Locus tag: VP2562
Name: pyrG
Funciton: CTP synthase (EC 6.3.4.2)
Locus tag: VP2561
Name: eno
Funciton: Enolase (EC 4.2.1.11)
VP2562
pyrG
CTP synthase (EC 6.3.4.2)
VP2561
eno
Enolase (EC 4.2.1.11)
Position: -313
Score: 5.5
Sequence: CTTATTTTATTATACAAAAAAAT
Locus tag: VP0829
Name: nagA
Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Locus tag: VP0828
Name: nagC
Funciton: N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
VP0829
nagA
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
VP0828
nagC
N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
Position: -185
Score: 5.2
Sequence: TTTATTTTGAGCAGTAAAATATA
Locus tag: VPA1651
Name: mcp2
Funciton: N-acetylglucosamine regulated methyl-accepting chemotaxis protein
VPA1651
mcp2
N-acetylglucosamine regulated methyl-accepting chemotaxis protein
Position: -148
Score: 5.1
Sequence: CTTATTTCACGCTAAAAATTTAA
Locus tag: VP2629
Name: mcp
Funciton: N-acetylglucosamine regulated methyl-accepting chemotaxis protein
VP2629
mcp
N-acetylglucosamine regulated methyl-accepting chemotaxis protein
Position: -269
Score: 5.3
Sequence: CTTTTTTTTATTAAAAAAATAAC
Locus tag: VP1029
Name: VP1029
Funciton: Hypothetical protein
Locus tag: VP1028
Name: tfoX
Funciton: DNA transformation protein TfoX
VP1029
VP1029
Hypothetical protein
VP1028
tfoX
DNA transformation protein TfoX
Position: -149
Score: 4.3
Sequence: CATTTTTCTTGTGACAAAATGTG
Locus tag: VP0619
Name: chi
Funciton: Chitinase (EC 3.2.1.14)
VP0619
chi
Chitinase (EC 3.2.1.14)
Position: -208
Score: 5.3
Sequence: TTTATTTCTAGCTTCAAAATAAA
Locus tag: VP0795
Name: ptsH
Funciton: Phosphocarrier protein of PTS system
Locus tag: VP0794
Name: ptsI
Funciton: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
Locus tag: VP0793
Name: crr
Funciton: PTS system, glucose-specific IIA component (EC 2.7.1.69)
VP0795
ptsH
Phosphocarrier protein of PTS system
VP0794
ptsI
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
VP0793
crr
PTS system, glucose-specific IIA component (EC 2.7.1.69)
Position: -140
Score: 5.1
Sequence: AATTTTTTTTGACGAAAAAAAAC
Locus tag: VPA0055
Name: chiA
Funciton: Chitinase (EC 3.2.1.14)
VPA0055
chiA
Chitinase (EC 3.2.1.14)
Position: -128
Score: 5.1
Sequence: TTTATTTCAAGCCTTGAAATAAA
Locus tag: VP2600
Name: pgk
Funciton: Phosphoglycerate kinase (EC 2.7.2.3)
Locus tag: VP2599
Name: fbaA
Funciton: Fructose-bisphosphate aldolase class II (EC 4.1.2.13)
VP2600
pgk
Phosphoglycerate kinase (EC 2.7.2.3)
VP2599
fbaA
Fructose-bisphosphate aldolase class II (EC 4.1.2.13)
Position: -231
Score: 4.6
Sequence: CTTAATTCAAGCCATAAATTTTA
Position: -63
Score: 5.4
Sequence: CTTATTTTATAATGCGAATTAAT
Locus tag: VPA0038
Name: nagB
Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
VPA0038
nagB
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise