Regulog NanR (SiaQ) - Vibrionales

Properties
Regulator type:	Transcription factor
Regulator family:	RpiR
Regulation mode:	repressor
Biological process:	Sialic acid utilization
Effector:	N-acetylmannosamine-6-phosphate
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 6 sites [see more]

Member of regulog collections

By taxonomy - Vibrionales
By TF family - RpiR
By effector - N-acetylmannosamine-6-phosphate
By pathway - Sialic acid utilization

Statistics of regulated genes
Genome	Genes	Operons
Vibrio cholerae O1 biovar eltor str. N16961	10	3
Vibrio vulnificus CMCP6	10	2
Vibrio harveyi ATCC BAA-1116
Vibrio parahaemolyticus RIMD 2210633
Vibrio shilonii AK1	5	1
Vibrio splendidus LGP32
Vibrio fischeri ES114
Vibrio salmonicida LFI1238
Vibrio angustum S14
Photobacterium profundum SS9

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
nanE	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -115 score = 5.93599 sequence = GGTGGAGATTATTTTCAAA Gene: VC1781: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	* Vibrio vulnificus CMCP6 Site: position = -190 score = 6.05637 sequence = GATGAAGATTATTTTCAAA Gene: VV20734: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114 Gene: VF_A0628: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	Vibrio salmonicida LFI1238	Vibrio angustum S14 Gene: VAS14_02101: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	Photobacterium profundum SS9	N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)
nanK	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC1782: N-acetylmannosamine kinase (EC 2.7.1.60)	Vibrio vulnificus CMCP6 Gene: VV20735: N-acetylmannosamine kinase (EC 2.7.1.60)	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1 Gene: VSAK1_18287: N-acetylmannosamine kinase (EC 2.7.1.60)	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	N-acetylmannosamine kinase (EC 2.7.1.60)
nagA	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC1783: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Vibrio vulnificus CMCP6 Gene: VV20736: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1 Gene: VSAK1_18282: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)

CRON 2.
siaP	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -118 score = 5.93599 sequence = TTTGAAAATAATCTCCACC Gene: VC1779: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein	* Vibrio vulnificus CMCP6 Site: position = -189 score = 6.05637 sequence = TTTGAAAATAATCTTCATC Gene: VV20733: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	* Vibrio shilonii AK1 Site: position = -115 score = 5.9993 sequence = TTTGAAAATAATCTTCACG Gene: VSAK1_18299: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRA2281: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein	TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein
siaS	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC1778: TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter	Vibrio vulnificus CMCP6 Gene: VV20732: TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1 Gene: VSAK1_18304: TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRA2280: TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter	TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter
siaT	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC1777: TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter	Vibrio vulnificus CMCP6 Gene: VV20731: TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1 Gene: VSAK1_18309: TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRA2279: TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter	TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter
nanA	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC1776: N-acetylneuraminate lyase (EC 4.1.3.3)	Vibrio vulnificus CMCP6 Gene: VV20730: N-acetylneuraminate lyase (EC 4.1.3.3)	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1 Gene: VSAK1_18314: N-acetylneuraminate lyase (EC 4.1.3.3)	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	N-acetylneuraminate lyase (EC 4.1.3.3)
nanR	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC1775: Sialic acid utilization regulator, RpiR family	Vibrio vulnificus CMCP6 Gene: VV20729: Sialic acid utilization regulator, RpiR family	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1 Gene: VSAK1_18319: Sialic acid utilization regulator, RpiR family	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Sialic acid utilization regulator, RpiR family
nanM	2 Vibrio cholerae O1 biovar eltor str. N16961* Gene: VC1773: Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase Site: position = -123 score = 5.56921 sequence = AGTGAAGATAATTTTTACT Gene: VC1774: Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase	2 Vibrio vulnificus CMCP6 Gene: VV20727: Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase Gene: VV20726: Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	2 Vibrio shilonii AK1 Gene: VSAK1_18329: Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase Gene: VSAK1_18334: Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NanR (SiaQ) - Vibrionales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --