Regulog FMN - Vibrionales
| Regulator type: | RNA regulatory element |
| Name: | FMN |
| RFAM: | RF00050 |
| Regulation mode: | |
| Biological process: | Riboflavin biosynthesis |
| Effector: | Flavin mononucleotide |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Vibrionales
- By RNA motif - FMN
- By effector - Flavin mononucleotide
- By pathway - Riboflavin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Vibrio cholerae O1 biovar eltor str. N16961 | 1 | 1 |
| Vibrio vulnificus CMCP6 | 1 | 1 |
| Vibrio harveyi ATCC BAA-1116 | 1 | 1 |
| Vibrio parahaemolyticus RIMD 2210633 | 1 | 1 |
| Vibrio shilonii AK1 | 1 | 1 |
| Vibrio splendidus LGP32 | 1 | 1 |
| Vibrio fischeri ES114 | ||
| Vibrio salmonicida LFI1238 | ||
| Vibrio angustum S14 | 1 | 1 |
| Photobacterium profundum SS9 | 1 | 1 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| ribB |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -254 score = 112.02 sequence = ACAATATTCTCAGGG... Gene: VCA1060: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Vibrio vulnificus CMCP6 Site: position = -238 score = 125.26 sequence = TTTTTATTCTCAGGG... Gene: VV21426: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*2
Vibrio harveyi ATCC BAA-1116 Site: position = -315 score = 124.34 sequence = TCAATGTTCTCAGGG... Gene: VIBHAR_05311: 3,4-dihydroxy-2-butanone 4-phosphate synthase Gene: VIBHAR_06238: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -253 score = 128.02 sequence = ATTGTTCTCAGGGCG... Gene: VPA1250: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Vibrio shilonii AK1 Site: position = -343 score = 131.4 sequence = TTTATTCTCAGGGCG... Gene: VSAK1_11965: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Vibrio splendidus LGP32 Site: position = -497 score = 121.84 sequence = TTTATTCTCAGGGCG... Gene: VS_II1263: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
|
|
*
Vibrio angustum S14 Site: position = -164 score = 124.17 sequence = TATTAATTCTCAGGG... Gene: VAS14_06598: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Photobacterium profundum SS9 Site: position = -330 score = 99.53 sequence = TCTGAATTCTCAGGG... Gene: PBPRB0898: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
3,4-dihydroxy-2-butanone 4-phosphate synthase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |