Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Vibrio fischeri ES114

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AgaR N-acetylgalactosamine-6-phosphate; Galactosamine-6-phosphate N-acetylgalactosamine utilization 2 2
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 7 12
TF BirA Biotin Biotin biosynthesis 2 2
TF CelR2 Cellobiose-6-phosphate Cellobiose utilization 1 2
TF CueR Copper ion, (Cu+) Copper resistance 3 3
TF EbgR Beta-galactosides Galactosides utilization 4 8
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 7 7
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 8 7
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Fructose utilization 2 6
TF Fur Iron ion, (Fe2+) Iron homeostasis 30 41
TF GalR Galactose Galactose utilization 2 3
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 21 18
TF HutC cis-Urocanic acid Histidine utilization 2 2
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 3 4
TF LexA DNA damage SOS response 16 16
TF MalI Maltose utilization 2 4
TF MetJ S-adenosylmethionine Methionine metabolism; Methionine biosynthesis 11 20
TF MetR Homocysteine Methionine biosynthesis 5 9
TF NagC N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 26 24
TF NarP Nitrite; Nitrate Nitrate and nitrite respiration 18 20
TF NorR Nitric oxide Nitrosative stress response 4 6
TF NorR2 Nitric oxide Nitrosative stress response 2 3
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 3 4
TF NsrR Nitric oxide Nitrosative stress response 5 6
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 3 3
TF PdhR Pyruvate Pyruvate metabolism 1 2
TF PhnR Phosphonate utilization; 2-aminoethylphosphonate utilization 1 1
TF PhsR Thiosulfate Thiosulfate reduction 2 2
TF PurR Hypoxanthine; Guanine Purine metabolism 18 15
TF RbsR Ribose Ribose utilization 1 1
TF SdaR D-glycerate Glycerate utilization 1 1
TF SiaR Glucosamine-6-phosphate Sialic acid utilization 5 8
TF TrpR Tryptophan Tryptophan biosynthesis 3 2
TF TyrR Tyrosine; Phenylalanine Aromatic amino acid metabolism 6 5
TF VF_1255 Sugar utilization 1 1
TF ZntR Zinc ion, (Zn2+) Zinc resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 7 6
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 2 2
RNA GEMM_RNA_motif Cyclic diguanylate Second messenger response 2 1
RNA Glycine Glycine Glycine metabolism 1 2
RNA His_leader Histidine biosynthesis 1 1
RNA L10_leader Ribosome biogenesis 1 1
RNA Leu_leader Branched-chain amino acid biosynthesis 1 1
RNA Lysine Lysine Lysine biosynthesis 2 2
RNA MOCO_RNA_motif Molybdenum Molybdopterin biosynthesis; Molybdenum homeostasis 1 1
RNA S15 Ribosome biogenesis 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 3 3
RNA Thr_leader Threonine biosynthesis 1 1
RNA Trp_leader Tryptophan biosynthesis 1 1
RNA yybP-ykoY 2 2
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